View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17528_low_6 (Length: 249)
Name: NF17528_low_6
Description: NF17528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17528_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 45936882 - 45937098
Alignment:
| Q |
1 |
atttgcaccgggctttcttactgtataatttcttggaccattgagagaaaagggcctctttatgtctctgtatttacccccttgcagcttatcatcacag |
100 |
Q |
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| T |
45936882 |
atttgcaccgggctttcttattgtataatttcttggaccattgagagaaaagggcctctttatgtctctgtatttacccccttgcagcttatcatcacag |
45936981 |
T |
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| Q |
101 |
cttttattagctgggcttttcttcgggagaaattatatgttggaacgtaagcaatttaattgattaattagttcataattacatataattatatttagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45936982 |
cttttattagctgggcttttcttcgggagaaattatatgttggaacgtaagcaatttaattgattaattagttcataattacatataattatatttagta |
45937081 |
T |
|
| Q |
201 |
gtactaattatggtcta |
217 |
Q |
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||||||||||||||||| |
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| T |
45937082 |
gtactaattatggtcta |
45937098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 10562486 - 10562608
Alignment:
| Q |
24 |
tataatttcttggaccattgagagaaaagggcctctttatgtctctgtatttacccccttgcagcttatcatcacagcttttattagctgggcttttctt |
123 |
Q |
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||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
10562486 |
tataatttcatggaccattgggagaaaaggtcctctttatgtgtctgtatttactcccttgcagcttatcctcacagcttttattagctgggcttttatt |
10562585 |
T |
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| Q |
124 |
cgggagaaattatatgttggaac |
146 |
Q |
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| T |
10562586 |
caggagaaattatacgttggaac |
10562608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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