View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17528_low_9 (Length: 235)
Name: NF17528_low_9
Description: NF17528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17528_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 29445090 - 29444870
Alignment:
| Q |
1 |
cataaacaaatgaacattttccatatctctagaaagtataaacactttgataagaaaataaataaagtagaaacacaacataattttcccatcctattgc |
100 |
Q |
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| T |
29445090 |
cataaacaaatgaacattttccatatctctagaaagtataaacactttgataagaaaataaataaagtagaaacacaacataattttcccatcctattgc |
29444991 |
T |
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| Q |
101 |
ctcaatgaaatcggttgcactgtccattaaatgtaagtgaatctctgtcacatgtcgcatgatggttgctttctttacattttacggacaattagaatag |
200 |
Q |
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| T |
29444990 |
ctcaatgaaatcggttgcactgtccattaaatgtaagtgaatctctgtcacatgtcacatgatggttgcttcctttacattttatggacaattagaatag |
29444891 |
T |
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| Q |
201 |
ctgatgaggggatgatatatt |
221 |
Q |
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| T |
29444890 |
ctgatgaggggatgatatatt |
29444870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 29421729 - 29421791
Alignment:
| Q |
109 |
aatcggttgcactgtccattaaatgtaagtgaatctctgtcacatgtcgcatgatggttgctt |
171 |
Q |
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| T |
29421729 |
aatcagttgcattgtccatgaaatgcaagtgaatctctgtcacatatcacatgatggttgctt |
29421791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29421602 - 29421646
Alignment:
| Q |
1 |
cataaacaaatgaacattttccatatctctagaaagtataaacac |
45 |
Q |
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| T |
29421602 |
cataaacaaatggacattttccatatctctagaaagtagaaacac |
29421646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 29421634 - 29421677
Alignment:
| Q |
64 |
aaagtagaaacacaacataattttcccatcctattgcctcaatg |
107 |
Q |
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| T |
29421634 |
aaagtagaaacacgtcataattttcccatcctattgcctcaatg |
29421677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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