View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17529_high_1 (Length: 313)
Name: NF17529_high_1
Description: NF17529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17529_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 2 - 247
Target Start/End: Complemental strand, 1600419 - 1600174
Alignment:
| Q |
2 |
tgaatgctaaggctgttgtctcgatggtacttttaaggccatccttgagaaagatagcagctccacctgattttcctttgagcgacgaaaataggaaatt |
101 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1600419 |
tgaatgctaaggttgttgtctcgatggtacttttaaggccatccttgagaaagatagcagctccacctgattttcctttgagtgacgaaaataggaaatt |
1600320 |
T |
|
| Q |
102 |
cttctctagtcatggatgccttcttgaatgaaccctgaaatgtaagatgcttttttgttgagatttacttctgaaagaaattacttattgtttataagtc |
201 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1600319 |
cttctcgagtcatggatgccttcttgaatgaaccctgaaatgtaagatgcttttttgttgagatttacttctgaaagaaattacttattgtttataagtc |
1600220 |
T |
|
| Q |
202 |
tgtgcataataattgtgtaagttagtatttttgagatttaacttgt |
247 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
1600219 |
tgtgcataataattgcgtaagttaatatttttgagatttaacttgt |
1600174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 55505329 - 55505420
Alignment:
| Q |
15 |
tgttgtctcgatggtacttttaaggccatccttgagaaagatagcagctccacctgattttcctttgagcgacgaaaataggaaattcttct |
106 |
Q |
| |
|
||||| ||| |||||| ||| ||||||||| |||||||||||| |||| ||||||| ||||| |||||| |||||||| | |||| |||||| |
|
|
| T |
55505329 |
tgttgactcaatggtattttcaaggccatcattgagaaagataacagcgccacctggttttcatttgagtgacgaaaagaagaaactcttct |
55505420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 640803 - 640730
Alignment:
| Q |
2 |
tgaatgctaaggctgttgtctcgatggtacttttaaggccatccttgagaaagatagcagctccacctgatttt |
75 |
Q |
| |
|
|||||||||| | |||| ||| |||||| ||| ||||||||| ||||||||||||| | ||||||||| |||| |
|
|
| T |
640803 |
tgaatgctaatgtcgttgactcaatggtattttcaaggccatcattgagaaagatagtaactccacctggtttt |
640730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 298
Target Start/End: Complemental strand, 1600191 - 1600163
Alignment:
| Q |
270 |
ttttgagatttaacttgtataatgcaaat |
298 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1600191 |
ttttgagatttaacttgtataatgcaaat |
1600163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 38267799 - 38267894
Alignment:
| Q |
34 |
ttaaggccatccttgagaaagatagcagctccacctgattttcctttgagcgacgaaaataggaaattcttctctagtcatggatgccttcttgaa |
129 |
Q |
| |
|
||||| |||||| ||||||||||||| |||||||||||||||||| || |||| |||||||| | |||||| |||||||||||||||||||| |
|
|
| T |
38267799 |
ttaagcccatccctgagaaagatagctgctccacctgattttcctacgaccgacagaaataggacactcttcttgcgtcatggatgccttcttgaa |
38267894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 37937752 - 37937650
Alignment:
| Q |
25 |
atggtacttttaaggccatccttgagaaagatagcagctccacctgattttcctttgagcgacgaaaataggaaattcttctctagtcatggatgccttc |
124 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||| ||||||||| ||||||| |||| | |||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
37937752 |
atggtagttttaagcccatccttgagaaa--tagctgctccacctagttttcctatgagtgtaagaaatagaaaactcttctcgcgtcatggatgccttc |
37937655 |
T |
|
| Q |
125 |
ttgaa |
129 |
Q |
| |
|
||||| |
|
|
| T |
37937654 |
ttgaa |
37937650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University