View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17529_low_1 (Length: 394)
Name: NF17529_low_1
Description: NF17529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17529_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 146 - 379
Target Start/End: Complemental strand, 12313158 - 12312925
Alignment:
| Q |
146 |
aaaaagcacacagtttgatgctgtaataaatctcaaccattaatattagaacgacggttaagattagacatcaatttaatacagttggatgatctagacc |
245 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| | || |
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| T |
12313158 |
aaaaaacacacagtttgatgctgtaataaatctcagccattaatattagaacaacggttaagattagacatcaatttaatacagttgaatgatctgggcc |
12313059 |
T |
|
| Q |
246 |
gttcatataaactgaacggtcctaatctattacagaatcacgctataactaatatctagcattttccatataacaattccctttgagaaaactatgttaa |
345 |
Q |
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|||||||||||||| ||||||||||||| |||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12313058 |
gttcatataaactggacggtcctaatctgttacagcatcatgctgtaactgatatctagcattttccatataacaattccctttgagaaatctatgttaa |
12312959 |
T |
|
| Q |
346 |
gaagacaatttgatgggaccacacaacacaaacg |
379 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
12312958 |
gaagacaatatgatgggaccacacaacacaaacg |
12312925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 12314224 - 12314121
Alignment:
| Q |
9 |
gaacctgtgtttatcttaaaattttattgttgttggtcttggcgcaaatgtgacaatatattaatccatgcaggtggcacatcagttatacaacaattcc |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12314224 |
gaacctctgtttatcttaaaattttattgttgttggttttggcgcaaatgtgacaatatattaatccatgcaggtggcacatcagttatacaacaattcc |
12314125 |
T |
|
| Q |
109 |
cttt |
112 |
Q |
| |
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|||| |
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| T |
12314124 |
cttt |
12314121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 5005506 - 5005389
Alignment:
| Q |
132 |
gatttggagcagtaaaaaagcacacagtttgatgctgtaataaatctcaaccattaatattagaac-gacggttaagattagacatcaatttaatacagt |
230 |
Q |
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||||||| || ||||||||| |||||||||| |||||||||||||| || ||||| ||||||| || ||||||| |||||| |||||| ||||| ||||| |
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| T |
5005506 |
gatttggtgctgtaaaaaagaacacagtttggtgctgtaataaatcccagccattgatattagtacggacggttcagattaaacatcagtttaacacagt |
5005407 |
T |
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| Q |
231 |
tggatgatctagaccgtt |
248 |
Q |
| |
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|| || ||||| |||||| |
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| T |
5005406 |
tgaataatctaaaccgtt |
5005389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 17458078 - 17457977
Alignment:
| Q |
132 |
gatttggagcagtaaaaaagcacacagtttgatgctgtaataaatctcaaccattaatattagaac-gacggttaagattagacatcaatttaatacagt |
230 |
Q |
| |
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||||||| || ||||||||| | |||||||| ||||||||||||||||||||||| ||||||| || ||||||| |||||| |||||| ||||| ||||| |
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| T |
17458078 |
gatttggtgccgtaaaaaagaatacagtttggtgctgtaataaatctcaaccattgatattaggacggacggtttagattaaacatcagtttaacacagt |
17457979 |
T |
|
| Q |
231 |
tg |
232 |
Q |
| |
|
|| |
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|
| T |
17457978 |
tg |
17457977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 27646925 - 27647030
Alignment:
| Q |
120 |
tttttggatcaagatttggagcagtaaaaaagcacacagtttgatgctgtaataaatctcaaccattaatattagaacg-acggttaagattagacatca |
218 |
Q |
| |
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|||| |||||| ||||||| || |||||||||||||||||||| |||||||||||||| || ||||| |||| | || | |||||| |||||||||| || |
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| T |
27646925 |
ttttcggatcaggatttggtgctgtaaaaaagcacacagtttggtgctgtaataaatcacagccattgatatcaaaatgaacggttcagattagacagca |
27647024 |
T |
|
| Q |
219 |
atttaa |
224 |
Q |
| |
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||||| |
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|
| T |
27647025 |
gtttaa |
27647030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 256
Target Start/End: Original strand, 36711563 - 36711673
Alignment:
| Q |
147 |
aaaagcacacagtttgatgctgtaataaatctcaaccattaatattagaac-gacggttaagattagacatcaatttaatacagttggatgatctagacc |
245 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || || ||||||| ||||| || || ||||||||||||| ||||| ||||||| |||||| ||| |
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| T |
36711563 |
aaaagcacacagtttggtgctgtaataaatcccagccgttaatatcagaacaaacaatttagattagacatcagtttaacacagttgagtgatctgaacc |
36711662 |
T |
|
| Q |
246 |
gttcatataaa |
256 |
Q |
| |
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||| ||||||| |
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|
| T |
36711663 |
gttgatataaa |
36711673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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