View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17529_low_3 (Length: 287)
Name: NF17529_low_3
Description: NF17529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17529_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 35630298 - 35630554
Alignment:
| Q |
19 |
gatcttacataaacttcatgttgttctgcggatcaacatcaatagtaggagaagaatctggtaactgaacagacacttctagtgactgtttgtttgtata |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
35630298 |
gatcttacataaacttcatgttgttctgcggatcaacatcaatagtaggagaagaatttggtaactgcacagacgcttctagtgactgtttgtttgtatc |
35630397 |
T |
|
| Q |
119 |
ttgcgtactcatcgctaacaacaagcacttcctttgattgtttgtttgtgttatgcgttgttgtaacattcttaagtgcattcgatcatggtatctatat |
218 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35630398 |
ttgcgtcctcatcgctaacaacaagcacttcctctgattgtttgtttgtgttatgcgttgttgtaacattcttaagtgcattcgatcatggtatctatat |
35630497 |
T |
|
| Q |
219 |
atgtatccatgaatggtgacggggtctttggaagaatccatcttctctttgtatttt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35630498 |
atgtatccatgaatggtgacggggtctttggaagaatccatcttctctttgtatttt |
35630554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 27401932 - 27402114
Alignment:
| Q |
20 |
atcttacataaacttcatgttgttctgcggatcaacatcaatagtaggagaagaatctggtaactgaacagacacttctagtgactgtttgtttgtatat |
119 |
Q |
| |
|
||||| ||||| |||| || ||| ||||| |||||||||| ||| ||||||| ||| ||||||||| | || ||||||| ||||||||||||| |||| | |
|
|
| T |
27401932 |
atcttccataaccttcctgctgtcctgcgcatcaacatcagtagcaggagaataatttggtaactgcataggcacttcttgtgactgtttgttcgtatgt |
27402031 |
T |
|
| Q |
120 |
tg--cgtactcatcgctaacaacaagcacttcctttgattgtttgtttgtgttatgcgttgttgtaacattcttaagtgcatt |
200 |
Q |
| |
|
|| | | ||| || | ||||||||||||||| |||||||||||||||||||||| ||| ||||||| ||| ||| |||| |
|
|
| T |
27402032 |
tgctcatcctcttcatttgcaacaagcacttcctctgattgtttgtttgtgttatgctctgtagtaacatccttcagtacatt |
27402114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 11665886 - 11665738
Alignment:
| Q |
50 |
atcaacatcaatagtaggagaagaatctggtaactgaacagacacttctagtgactgtttgtttgtatattg--cgtactcatcgctaacaacaagcact |
147 |
Q |
| |
|
|||| ||||||||| ||||| ||||| | ||||||| |||| ||||||| |||||||||||||||||| ||| | | ||||| || ||||| ||||| |
|
|
| T |
11665886 |
atcatcatcaatagcaggagcagaattttgtaactgcacaggcacttcttgtgactgtttgtttgtatcttgctcatcatcatcattagcaacaggcact |
11665787 |
T |
|
| Q |
148 |
tcctttgattgtttgtttgtgttatgcgttgttgtaacattcttaagtg |
196 |
Q |
| |
|
|||| |||| |||||||||| |||||| |||| ||||||| |||||||| |
|
|
| T |
11665786 |
tcctctgatcgtttgtttgtattatgctttgtagtaacatccttaagtg |
11665738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University