View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1752_high_11 (Length: 244)
Name: NF1752_high_11
Description: NF1752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1752_high_11 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 442650 - 442734
Alignment:
| Q |
98 |
aacgagccatttgtctcacttagtactcattgctctcataatgctattttcctttcaaaagctctttagatcagtagtcataaat |
182 |
Q |
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| T |
442650 |
aacgtgccatttgtcgcatttagtactcatggctctcataatgctattctcctttcaaaagctctttagatcagtagtcctaaat |
442734 |
T |
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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 50828661 - 50828551
Alignment:
| Q |
36 |
aatgatgttttctaaaccttttatagtgaaaaatgatcatgtttgagctgaggatagcaactaacgagccatttgtctcacttagtactcattgctctca |
135 |
Q |
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| T |
50828661 |
aatgatgttttcttaactttttatagtgaaaaaatatcatgtttgagatgaggagagcagttaatgtgccatttgtctcatttagtactcatggctctca |
50828562 |
T |
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| Q |
136 |
taatgctattt |
146 |
Q |
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| T |
50828561 |
aaatgttattt |
50828551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 50847192 - 50847302
Alignment:
| Q |
36 |
aatgatgttttctaaaccttttatagtgaaaaatgatcatgtttgagctgaggatagcaactaacgagccatttgtctcacttagtactcattgctctca |
135 |
Q |
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| T |
50847192 |
aatgatgttttcttaactttttatagtgaaaaaatatcatgtttgagatgaggagagcagttaatgtgccatttgtctcatttagtactcatggctctca |
50847291 |
T |
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| Q |
136 |
taatgctattt |
146 |
Q |
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| T |
50847292 |
aaatgttattt |
50847302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 25435036 - 25435146
Alignment:
| Q |
36 |
aatgatgttttctaaaccttttatagtgaaaaatgatcatgtttgagctgaggatagcaactaacgagccatttgtctcacttagtactcattgctctca |
135 |
Q |
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| T |
25435036 |
aatgatgttttcttaactttttatagcgaaaaaatatcatgtttgagatgaggagagcagttaatgtgccatttgtctcatttagtactcatggctctca |
25435135 |
T |
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| Q |
136 |
taatgctattt |
146 |
Q |
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| T |
25435136 |
aaatgttattt |
25435146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 80552 - 80488
Alignment:
| Q |
117 |
ttagtactcattgctctcataatgctattttcctttcaaaagctctttagatcagtagtcataaat |
182 |
Q |
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| T |
80552 |
ttagtactcatggctctcataatgctattttcttttcaaaatct-tttagatgagtagtcctaaat |
80488 |
T |
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