View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1752_high_12 (Length: 230)
Name: NF1752_high_12
Description: NF1752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1752_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 21468829 - 21468630
Alignment:
| Q |
16 |
cataggtttggcatcaaaatcactatttgtctacaatcaatcaatatagaagtgaatatgttttt-ccgatatttaaaacgcagttagcttaatcaaaaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
21468829 |
cataggtttggcatcaaaatcactatttgtctacaatcaatcaatatagaagtgaatatgttttttccgatatttaaaacgcggttagcttaatcaaaaa |
21468730 |
T |
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| Q |
115 |
gttacacaaaagaacaagagtcatatactgactagtaaaggagatacgaaatcgttgaatcgataggcaacttccaaaggcttcaacttttgaatgtaaa |
214 |
Q |
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| T |
21468729 |
gttacacaaaagaacaagagtcatatactgactagtaaaggagatacgaaatcgttgaatcgataggcaacttctaaaggcttcaacttttgaatgtaaa |
21468630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 21498370 - 21498306
Alignment:
| Q |
150 |
taaaggagatacgaaatcgttgaatcgataggcaacttccaaaggcttcaacttttgaatgtaaa |
214 |
Q |
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| T |
21498370 |
taaaggagaaacgaaatcgttgaatcgataagtcacttctaatggcatcaatttctgaatgtaaa |
21498306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 40921281 - 40921250
Alignment:
| Q |
16 |
cataggtttggcatcaaaatcactatttgtct |
47 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40921281 |
cataggtttggcatcaaaatcactatttgtct |
40921250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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