View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1752_high_3 (Length: 446)
Name: NF1752_high_3
Description: NF1752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1752_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 82 - 431
Target Start/End: Complemental strand, 17386529 - 17386181
Alignment:
| Q |
82 |
acacatgtagttacattcaatcatttccattttcataaattgttgctaatgtatgtggtgtgtgacgtgtccgcgt-ttggtttgtgattcattggttga |
180 |
Q |
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| T |
17386529 |
acacatgtagttacattcaatcatttccattttcataaattgttgctagtgtatgtggtgtgtgaggtgtccgcatcttggtttgtgattcataggttga |
17386430 |
T |
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| Q |
181 |
cttaatggtctaatgtttctaatgtaacactgtgacatgagagtcagtgattcttattcattttgttgtgtttaatctagaatttggtagatatttgttg |
280 |
Q |
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| T |
17386429 |
cttaatggtctaatgtctctaatgtaacactgtgacatgag--tcagtgattcttattcattttgttgtgtttaatctagaatttggtagatatttgttg |
17386332 |
T |
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| Q |
281 |
ctgttttagtattatgtgaaccaaactggaattgaaaattttggactttttgattttgctagttttgttgtgtattatagtcatggtattacaaatattg |
380 |
Q |
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| T |
17386331 |
ctgttttagtattatgtgaaccaaactggaattgaaaattttggactttttgattttgctagttttgttgtgtattatagtcatggtattacaaatattg |
17386232 |
T |
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| Q |
381 |
aattaggtgtttgtactctttccctttgttgtgctgattttaagtgagtaa |
431 |
Q |
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| T |
17386231 |
aattaggtgtttgtactctttccctttgttgtgctgattttaagttagtaa |
17386181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 17386627 - 17386556
Alignment:
| Q |
14 |
atcagtgtcaatgtgtcagtgtcgtttgtgatgttcttgtctgtggagtgcttgatagccggtttctgacac |
85 |
Q |
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| T |
17386627 |
atcagtgtcgatgtgtcaatgtcgtgtctgatgttcttgtctgtgcagtgcttcatagccggtgtctgacac |
17386556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 16567349 - 16567301
Alignment:
| Q |
79 |
ctgacacatgtagttacattcaatcatttccattttcataaattgttgc |
127 |
Q |
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| T |
16567349 |
ctgacacatgtggttacattcaatcatttccattttcttaaattattgc |
16567301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 5739644 - 5739610
Alignment:
| Q |
81 |
gacacatgtagttacattcaatcatttccattttc |
115 |
Q |
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| T |
5739644 |
gacacatgtacttacattcaatcatttccattttc |
5739610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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