View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1752_low_11 (Length: 265)
Name: NF1752_low_11
Description: NF1752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1752_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 36101280 - 36101512
Alignment:
| Q |
19 |
agatatcgaatctatatggaaattgatggttgaaggtgagacgttgtctatgcaatggaatccttatggtggaaggatggaagagatattgccatcagaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36101280 |
agatatcgaatctatatggaaattgatggttgaaggtgagacgttgtctatgcaatggaatccttatggtggaaggatggaagagatattgccatcagaa |
36101379 |
T |
|
| Q |
119 |
acaccatttcctcacagagctggaaacttgttcttgattcaatacattaattcttggatagaagaatctcctggagctattgaacatcatgtgaattttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36101380 |
acaccatttcctcacagagctggaaacttgttcttgattcaatacattaattcttggatagaagaatctcctggagctattgaacatcgtgtgaattttt |
36101479 |
T |
|
| Q |
219 |
caaggtcgtttcacgaattcatgacgccctatg |
251 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
36101480 |
caaggttgtttcacgaattcatgacgccctatg |
36101512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 36089781 - 36089559
Alignment:
| Q |
29 |
tctatatggaaattgatggttgaaggtgagacgttgtctatgcaatggaatccttatggtggaaggatggaagagatattgccatcagaaacaccatttc |
128 |
Q |
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||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
36089781 |
tctatgtggaaattgatgattgaaggtgagactttgtctatgcaatggaatccttacggtggaaggatggaagagatatcgccatcaaaaacaccatttc |
36089682 |
T |
|
| Q |
129 |
ctcacagagctggaaacttgttcttgattcaatacattaattcttggatagaagaatctcctggagctattgaacatcatgtgaatttttcaaggtcgtt |
228 |
Q |
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| T |
36089681 |
cacatagagcagggaacttgttcatgattcaatactttaattcttggacagaagaatgtcccaagactattgaacgtcatgtgaatttttcaaggttgtt |
36089582 |
T |
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| Q |
229 |
tcacgaattcatgacgccctatg |
251 |
Q |
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| | ||||||||||||||||||| |
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| T |
36089581 |
ttatgaattcatgacgccctatg |
36089559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 34971098 - 34970876
Alignment:
| Q |
21 |
atatcgaatctatatggaaattgatggttgaaggtgagacgttgtctatgcaatggaatccttatggtggaaggatggaagagatattgccatcagaaac |
120 |
Q |
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|||| ||||| ||||||||| ||||| |||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34971098 |
atatagaatccatatggaaaatgatgattgatggtgagacgttgcatatggaatggaatccttatggtggaaggatggaagagatattgtcatcagaaac |
34970999 |
T |
|
| Q |
121 |
accatttcctcacagagctggaaacttgttcttgattcaatacattaattcttggatagaagaatctcctggagctattgaacatcatgtgaatttttca |
220 |
Q |
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||| ||||| || ||||| || || |||||||||||| | ||| |||| ||||||| ||||||||||||| || |||| ||| | | |||||||||||| |
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| T |
34970998 |
accgtttccccatagagcagggaatttgttcttgattgagtactataatacttggattgaagaatctcctgaagttattaaacgtaacgtgaatttttca |
34970899 |
T |
|
| Q |
221 |
aggtcgtttcacgaattcatgac |
243 |
Q |
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||||||||| | |||||||||| |
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| T |
34970898 |
aggtcgttttataaattcatgac |
34970876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 36108555 - 36108777
Alignment:
| Q |
29 |
tctatatggaaattgatggttgaaggtgagacgttgtctatgcaatggaatccttatggtggaaggatggaagagatattgccatcagaaacaccatttc |
128 |
Q |
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|||||||||||||||||| |||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36108555 |
tctatatggaaattgatgattgaaggtgagaatttccttatgcaatggaatccatatggtggaaggatggaagagatattgccatcagaaacaccgtttt |
36108654 |
T |
|
| Q |
129 |
ctcacagagctggaaacttgttcttgattcaatacattaattcttggatagaagaatctcctggagctattgaacatcatgtgaatttttcaaggtcgtt |
228 |
Q |
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|||| ||||| |||||||||||||||||||||||| ||||| ||| | |||||| ||| || || ||||| ||||||||||||||| || ||||| |
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| T |
36108655 |
ctcatagagcaggaaacttgttcttgattcaataccttaatatatggtctaatgaatcttctgaagttagtgaacgtcatgtgaatttttctagatcgtt |
36108754 |
T |
|
| Q |
229 |
tcacgaattcatgacgccctatg |
251 |
Q |
| |
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| ||||| |||||||| |||| |
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| T |
36108755 |
ttttgaatttatgacgccttatg |
36108777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 21483275 - 21483500
Alignment:
| Q |
26 |
gaatctatatggaaattgatggttgaaggtgagacgttgtctatgcaatggaatccttatggtggaaggatggaagagatattgccatcagaaacaccat |
125 |
Q |
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|||| ||||||| ||||||| || ||||||| | ||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
21483275 |
gaatgtatatgggaattgataattaaaggtgaaagtttgcttatgcaatggaatccttacggtggaaggatggaagaaatattgccatcagaaacaccat |
21483374 |
T |
|
| Q |
126 |
ttcctcacagagctggaaacttgttcttgattcaatacattaattcttggatagaagaatctcctggagctattgaacatcatgtgaatttttcaaggtc |
225 |
Q |
| |
|
||||||| ||||| || ||||||||||||||| ||| |||| |||||| | |||||| || ||||||||||| |||||||||||||||||||| |
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| T |
21483375 |
ttcctcatagagcagggaacttgttcttgattttgtactataataattggattaatgaatcttctcaagctattgaacgccatgtgaatttttcaaggtc |
21483474 |
T |
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| Q |
226 |
gtttcacgaattcatgacgccctatg |
251 |
Q |
| |
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|| | || |||||||| ||||||| |
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| T |
21483475 |
agtttatgagttcatgacaccctatg |
21483500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 26 - 237
Target Start/End: Original strand, 8339171 - 8339382
Alignment:
| Q |
26 |
gaatctatatggaaattgatggttgaaggtgagacgttgtctatgcaatggaatccttatggtggaaggatggaagagatattgccatcagaaacaccat |
125 |
Q |
| |
|
||||| |||||||||| |||| ||||||||||||| |||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8339171 |
gaatcgatatggaaatcgatgattgaaggtgagactttgtttatgcaatggaatcctgatggcggaaggatggaagagatattgccatcagaaacaccat |
8339270 |
T |
|
| Q |
126 |
ttcctcacagagctggaaacttgttcttgattcaatacattaattcttggatagaagaatctcctggagctattgaacatcatgtgaatttttcaaggtc |
225 |
Q |
| |
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|||| || ||||| ||||||||||||||||||||||| ||||| |||||| ||||||||| | |||||||||||| ||||||||||||||||||||| |
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| T |
8339271 |
ttccccatagagcaggaaacttgttcttgattcaatatcttaatatttggattgaagaatcttcaagagctattgaacgtcatgtgaatttttcaaggtc |
8339370 |
T |
|
| Q |
226 |
gtttcacgaatt |
237 |
Q |
| |
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|||||| ||||| |
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| T |
8339371 |
gtttcatgaatt |
8339382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 26 - 243
Target Start/End: Original strand, 6839313 - 6839530
Alignment:
| Q |
26 |
gaatctatatggaaattgatggttgaaggtgagacgttgtctatgcaatggaatccttatggtggaaggatggaagagatattgccatcagaaacaccat |
125 |
Q |
| |
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||||| ||||||||||||||| ||||||||||| || | ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
6839313 |
gaatccatatggaaattgatgattgaaggtgaggatttatttatgcaatggaatccatatggtggaaggatgaaagagatattgccatcagaaacaccgt |
6839412 |
T |
|
| Q |
126 |
ttcctcacagagctggaaacttgttcttgattcaatacattaat-tcttggatagaagaatctcctggagctattgaacatcatgtgaatttttcaaggt |
224 |
Q |
| |
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||||||| ||||| ||||||||||||||||||| |||||||||| ||| | || | |||||| ||| || || ||||| |||| ||||||||||||||| |
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| T |
6839413 |
ttcctcatagagcaggaaacttgttcttgattctatacattaatatctggtcta-atgaatcttctgaagttagtgaacttcatatgaatttttcaaggt |
6839511 |
T |
|
| Q |
225 |
cgtttcacgaattcatgac |
243 |
Q |
| |
|
||||| | ||||| ||||| |
|
|
| T |
6839512 |
cgttttatgaatttatgac |
6839530 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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