View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1752_low_2 (Length: 458)
Name: NF1752_low_2
Description: NF1752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1752_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 438
Target Start/End: Complemental strand, 33649643 - 33649211
Alignment:
| Q |
11 |
caaaggcatcaagctaaactacgaaggaagacacaagtgccacaccacacgtgtcctacacttgcaaacaaacatgtaatttttaactggattggaccat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33649643 |
caaaggcatcaagctaaactacgaaggaagacacaagtgccacaccacacgtgtcctacacttgcaaacaaacatgtaatttttaactggattggaccat |
33649544 |
T |
|
| Q |
111 |
gttaaacattgtatgcatatgcatgactcaaattaaatgtgaacatatgataaatgaaagccaaaaacaggagctatccaaattaaaaattggaatttgt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33649543 |
gttaaacattgtatgcatatgcatgactcaaattaaatgtgaacatatgataaatgaaagccaaaaacaggagctatccaaattaaaaattggaatttgt |
33649444 |
T |
|
| Q |
211 |
ataattattagcatctgcattcatcaatttttcattacattaa------ttctcttggttgctggatagttacaactcaatttgaacataactaataaca |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33649443 |
ataattattagcatctgcattcatcaatttttcattacattaatcatagttctcttggttgctggatagtaacaactcaatttgaacataactaataaca |
33649344 |
T |
|
| Q |
305 |
aagcaaagatttagggagaagaaaatggaaccatatactataccctaatagtagtaataagttgttattgatgcaaaatacttgcattctgtccaacttt |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33649343 |
aagcaaagatttagggagaagaaaatggaaccatatattataccctaatagtagtaataagttgtta-tgatgcaaaatacttgcattctgtccaacttt |
33649245 |
T |
|
| Q |
405 |
tgcattaaataaactagtctagagatgcacggag |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
33649244 |
tgcattaaataaactagtctagagatgcacggag |
33649211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 323 - 391
Target Start/End: Complemental strand, 25813988 - 25813920
Alignment:
| Q |
323 |
aagaaaatggaaccatatactataccctaatagtagtaataagttgttattgatgcaaaatacttgcat |
391 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
25813988 |
aagataatggaaccatatactataccctagtagtagtaacaagttgatactgatgcaaaatacttgcat |
25813920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 25819754 - 25819695
Alignment:
| Q |
254 |
ttctcttggttgctggatagttacaactcaatttgaacataactaataacaaagcaaagat |
314 |
Q |
| |
|
|||| |||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
25819754 |
ttctattggtttctggaaagttacaactcgatt-gaacataactaataacaaagcaaagat |
25819695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 25819834 - 25819782
Alignment:
| Q |
162 |
aaatgaaagccaaaaacaggagctatccaaattaaaaattggaatttgtataa |
214 |
Q |
| |
|
|||||||||||| || || |||||||||||||| || |||||||||||||||| |
|
|
| T |
25819834 |
aaatgaaagccacaagcacgagctatccaaattgaatattggaatttgtataa |
25819782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University