View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1752_low_4 (Length: 388)
Name: NF1752_low_4
Description: NF1752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1752_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 52010850 - 52011195
Alignment:
| Q |
11 |
gagggatagactaatcaatctagacaagcagcttggtgactttgccaatgtagaaagtaatgtatattctgttataactcgtccacactggtcaagttgc |
110 |
Q |
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| T |
52010850 |
gagggatagactaatcaatctagacaagcagcttggtgactttgccaatgtagaaagtaatgtatattctgttataactcgtccacactggtcaagttgc |
52010949 |
T |
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| Q |
111 |
agcacctattccacaaataaatgttatggccatagtaataaaaatatcatcataattctcaccaactaaaatatattcacacaaagtaaattgtttgtaa |
210 |
Q |
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| T |
52010950 |
agcacctattccacaaataaatgttccggccatagtaataaaaatatcatcataattctcaccaactaaaatatattcacacaaagtaaattgtttgtaa |
52011049 |
T |
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| Q |
211 |
aagacatatgaatgacaggaatttggattgtgtctgtgcgtacagtcagccacatcagtggccatttgatcaagatcgaacaattcaaattttaaactat |
310 |
Q |
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| T |
52011050 |
aagacatatgaatgacaggaatttggattgtgtctgtgcgtacagtcagccacatcggtggccatttgatcaagatcgaacaattcaaattttaaactat |
52011149 |
T |
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| Q |
311 |
ttaaaacttaacatacaagaaacaccaaatgctatatgaaacaagt |
356 |
Q |
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| T |
52011150 |
ttaaaacttaacatacaagaaacaccaaatgctatatgaaacaagt |
52011195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 51998290 - 51998409
Alignment:
| Q |
15 |
gatagactaatcaatctagacaagcagcttggtgactttgccaatgtagaaagtaatgtatattctgttataactcgtccacactggtcaagttgcagca |
114 |
Q |
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| T |
51998290 |
gatagactaatcaatctagacaagcagtttggtgactttgccaatgtacaaggtaatgtatattcagttataattcgtccacattgctgaagttgcagaa |
51998389 |
T |
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| Q |
115 |
cctattccacaaataaatgt |
134 |
Q |
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| T |
51998390 |
cctattccacaaataaatgt |
51998409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 52000909 - 52000959
Alignment:
| Q |
84 |
ataactcgtccacactggtcaagttgcagcacctattccacaaataaatgt |
134 |
Q |
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| T |
52000909 |
ataactcgtccacattggtcaagttgtagcacctattacacaaataaatgt |
52000959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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