View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1752_low_5 (Length: 365)
Name: NF1752_low_5
Description: NF1752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1752_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 41980727 - 41980385
Alignment:
| Q |
18 |
agagttttatcaacggagaataccgtgaatggtactgaaaaggagccgaattattttccgatgaagctttaccaaacggcggtgacgacggaggaggaga |
117 |
Q |
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| T |
41980727 |
agagttttatcaacggagaataccgtgaatggtactgaaaaggagccgaattattttccgatgaagctttaccaaacggcggtgacgacggaggaggaga |
41980628 |
T |
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| Q |
118 |
cattggagtacgaattgagtgtggacgcgaagatggactatatggtgtggctgcatttcgcggagattgattcgagtgtgaaaaaagaaggagagagagt |
217 |
Q |
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| T |
41980627 |
cattggagtacgaattgagtgtggacgcgaagatggactatatggtgtggctgcatttcgcggagattgattcgagtgtgaaaaaagaaggagagagagt |
41980528 |
T |
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| Q |
218 |
ttttgatgtgtttatcaatggaaacaatgtaacaagagtcgatatttacaaagaagtgggaagttttgctgcttttacttggcattatactgtgaaaaat |
317 |
Q |
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| T |
41980527 |
ttttgatgtgtttatcaatggaaacaatgtaacaagagttgatatttacaaagaagtgggaagttttgctgcttttacttggcattatactgtgaaaaat |
41980428 |
T |
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| Q |
318 |
ttgagtagtaatgttttggggattaagcttgttactgtctctg |
360 |
Q |
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| T |
41980427 |
ttgagtagtaatgttttggggattaagcttgttactgtttctg |
41980385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 22084350 - 22084465
Alignment:
| Q |
210 |
gagagagtttttgatgtgtttatcaatggaaacaatgtaacaagagtcgatatttacaaagaagtgggaagttttgctgcttttacttggcattatactg |
309 |
Q |
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| T |
22084350 |
gagagggtgtttgatgtgttcatcaatggtgataatttgactagagtagatatttacaaacaagttgggggtttagctgcgtttacttggcatcatacag |
22084449 |
T |
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| Q |
310 |
tgaaaaatttgagtag |
325 |
Q |
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| T |
22084450 |
tgaagaatttgagtag |
22084465 |
T |
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