View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1752_low_6 (Length: 335)
Name: NF1752_low_6
Description: NF1752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1752_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 321
Target Start/End: Original strand, 7331708 - 7332022
Alignment:
| Q |
7 |
tagataatacttagatggtttctaaagtttgattaaaatttctaattgtaatgttaatatagtgtagagttatgatgatttaatatgtcctacacaattt |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7331708 |
tagaaaatacttagatggtttctaaagtttgattaaaatttctaattgtaatgttaatatagtgtagagttatgatgatttaatatgtcctacacaattt |
7331807 |
T |
|
| Q |
107 |
tctacacattgaacatgttacattttcatgttggatgtaagaaaaaggacttaaacaaaatgttatcatacttatttaaacaagtaactaattttacatt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7331808 |
tctacacattgaacatgttacattttcatgttggatgtaagaaaaaggacttaaacaaaatgttatcatacttatttaaacaagtaactaattttacatt |
7331907 |
T |
|
| Q |
207 |
agtaaatttacttaaatatgattgtggtaatagaggttcttgtttggttgatcaagtaggtcaagatttaaacaaaagttgtaatttgtaaaccctaagc |
306 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7331908 |
agtaaatttacttaaatatgattgaggtaatagaggttcttgtttggttgatcaagtaggtcaagatttaaacaaaagttgtaatttgtaaaccctaagg |
7332007 |
T |
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| Q |
307 |
tcgaataataaaaat |
321 |
Q |
| |
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||||||||||||||| |
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| T |
7332008 |
tcgaataataaaaat |
7332022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 34391886 - 34391932
Alignment:
| Q |
272 |
atttaaacaaaagttgtaatttgtaaaccctaagctcgaataataaaaa |
320 |
Q |
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| T |
34391886 |
atttaaacataagttgtaatttgtaa--cctaagcttgaataataaaaa |
34391932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 34412220 - 34412176
Alignment:
| Q |
272 |
atttaaacaaaagttgtaatttgtaaaccctaagctcgaataata |
316 |
Q |
| |
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||||||||| || ||||||| ||||||||||||||| |||||||| |
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| T |
34412220 |
atttaaacacaaattgtaatctgtaaaccctaagcttgaataata |
34412176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 6522202 - 6522158
Alignment:
| Q |
272 |
atttaaacaaaagttgtaatttgtaaaccctaagctcgaataata |
316 |
Q |
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||||||||| ||||||||||||||||| |||||| | |||||||| |
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| T |
6522202 |
atttaaacacaagttgtaatttgtaaatcctaagtttgaataata |
6522158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 31280527 - 31280571
Alignment:
| Q |
272 |
atttaaacaaaagttgtaatttgtaaaccctaagctcgaataata |
316 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||| | |||||| |
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|
| T |
31280527 |
atttaaacacaagttgcaatttgtaaaccctaagcttggataata |
31280571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 34372511 - 34372467
Alignment:
| Q |
272 |
atttaaacaaaagttgtaatttgtaaaccctaagctcgaataata |
316 |
Q |
| |
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||||||| | |||||||| ||||||||||||||||| |||||||| |
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| T |
34372511 |
atttaaatacaagttgtactttgtaaaccctaagcttgaataata |
34372467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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