View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1752_low_7 (Length: 318)

Name: NF1752_low_7
Description: NF1752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1752_low_7
NF1752_low_7
[»] chr1 (10 HSPs)
chr1 (19-307)||(13095186-13095474)
chr1 (19-307)||(13162308-13162596)
chr1 (19-307)||(13130615-13130903)
chr1 (19-264)||(30367268-30367510)
chr1 (19-297)||(13069318-13069593)
chr1 (24-187)||(14708221-14708384)
chr1 (19-297)||(13205246-13205521)
chr1 (19-189)||(13007975-13008145)
chr1 (35-92)||(13067510-13067567)
chr1 (19-104)||(13101775-13101860)
[»] chr6 (1 HSPs)
chr6 (143-264)||(31376409-31376527)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 13095186 - 13095474
Alignment:
Q  19 gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatcc 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  13095186 gcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatcaggtagttctcc 13095285  T
Q  119 accttcttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaat 218  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13095286 accttcttctgaatggattgttcgaccatgttcttgaagcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaat 13095385  T
Q  219 cagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaacattcttctttgtgatg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13095386 cagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaacattcttctttgtgatg 13095474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 13162308 - 13162596
Alignment:
Q  19 gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatcc 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  |||    
T  13162308 gcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtattagatagtcgtcc 13162407  T
Q  119 accttcttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaat 218  Q
    ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  13162408 accttcttctgaatggaatgttggaacatgttcttgaagcttttccttccaagaactaaatgaaacattgtcttctcctgtttccatacatcgttggaat 13162507  T
Q  219 cagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaacattcttctttgtgatg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13162508 cagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaaaattcttctttgtgatg 13162596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 13130615 - 13130903
Alignment:
Q  19 gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatcc 118  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  13130615 gcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccacatgagctcctgcttcagatacatcattaagaaatggtatcaggtagttctcc 13130714  T
Q  119 accttcttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaat 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  13130715 accttcttctgaatggattgttcgaacatgttcttgaagcttttccttccaagaactaaatgaaacattgtcttctcttgtttccatacatcgtcggaat 13130814  T
Q  219 cagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaacattcttctttgtgatg 307  Q
    ||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||  ||||||||||  ||||||||||||||||    
T  13130815 cagaattgaaaatactacctccaagaacttcaaaaatgtcatgatattttgaccctttcctgtagttgccacaattcttctttgtgatg 13130903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 30367510 - 30367268
Alignment:
Q  19 gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatcc 118  Q
    |||| |||| ||||| ||||||||||| |||  ||||||||| ||||||| ||  |||||||||||||||||||||| ||||||||  ||| | || |||    
T  30367510 gcagatgctgtcaaaagtgaacctattcaagatatcttgcaagtccacctcagaacctgcttcagatacatcattaataaatggtagtaggaatttctcc 30367411  T
Q  119 accttcttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaat 218  Q
    | ||| || | | | | ||||| ||||| ||||||||| |||||||||   |||||| |||||||||||| | ||| || ||||||||   ||| |||||    
T  30367410 agcttttttttactagtttgttggaacaagttcttgaagcttttccttttgagaattgaatgaaacattgccctcttctctttccata---cgtgggaat 30367314  T
Q  219 cagaattgaaaatactacctccaagaacttcaaaaatatcatggaa 264  Q
    ||||||||| ||||| |||||||| || ||||||||| || |||||    
T  30367313 cagaattgacaataccacctccaaaaaattcaaaaatttcttggaa 30367268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 13069593 - 13069318
Alignment:
Q  19 gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatcc 118  Q
    |||| |||||||||| ||||||||| | |||||||| | ||  ||||||||||| |||  ||||||||||||||||||||||||||  |||||||| |||    
T  13069593 gcagatgctatcaaaagtgaacctactcaaggcatcctccaggtccacctgagcacctatttcagatacatcattaagaaatggtagtaggtagttctcc 13069494  T
Q  119 accttcttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaat 218  Q
    | ||| ||||  || | ||||| ||| | |||||||||  ||||||||  ||||| | |||||||||||||| |||  ||||||||||   ||| |||||    
T  13069493 agctttttcttcatagtttgttggaagaagttcttgaaggttttccttttaagaaatgaatgaaacattgtcctctgttgtttccata---cgtgggaat 13069397  T
Q  219 cagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaacattctt 297  Q
     |||||| ||||||| | |||||| ||  |||||||| || | ||| || |||||  |  |||||||||||| ||||||    
T  13069396 tagaatttaaaataccatctccaaaaaaatcaaaaatttctttgaagttggacccccttccgtagttgccaaaattctt 13069318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 14708221 - 14708384
Alignment:
Q  24 tgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatccacctt 123  Q
    |||| ||||| ||||||||||| ||| ||||||| |||||||||||||| ||| |||| ||||||| ||||||||||||||  | | | || |||| | |    
T  14708221 tgctgtcaaaagtgaacctattcaagacatcttgtaaatccacctgagcacctacttctgatacatgattaagaaatggtagtaagcaattttccaacct 14708320  T
Q  124 cttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacatt 187  Q
    ||||||||||| ||||| ||| | ||||||||| |||||| ||   | ||||||||||||||||    
T  14708321 cttctgaatggtttgttggaagaagttcttgaagcttttctttttgataattaaatgaaacatt 14708384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 13205246 - 13205521
Alignment:
Q  19 gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatcc 118  Q
    |||| |||||||||| ||||||||| | |||||||| | ||  |||| |||||| |||  |||||||||||||| |||||||||||  |||||||| |||    
T  13205246 gcagatgctatcaaaagtgaacctactcaaggcatcctccaggtccagctgagcacctatttcagatacatcatcaagaaatggtagtaggtagttctcc 13205345  T
Q  119 accttcttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaat 218  Q
    | ||| ||||  || | ||||| ||| | |||||||||  ||||||||   |||| | |||||||||||||| |||  ||||||||||   ||| |||||    
T  13205346 agctttttcttcatagtttgttggaagaagttcttgaaggttttccttttgagaaatgaatgaaacattgtcctctgttgtttccata---cgttggaat 13205442  T
Q  219 cagaattgaaaatactacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaacattctt 297  Q
     |||||| ||||||| | |||||| ||  |||||||| || | ||| || |||||  |  |||||||||||| ||||||    
T  13205443 tagaatttaaaataccatctccaaaaaaatcaaaaatttctttgaagttggacccccttccgtagttgccaaaattctt 13205521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 13007975 - 13008145
Alignment:
Q  19 gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatgaggtagttatcc 118  Q
    |||| |||| ||||| ||||||||| | |||||||| | ||  ||||||||||| |||  ||||||||||||||||||||||||||  | | |||| |||    
T  13007975 gcagatgctgtcaaaagtgaacctactcaaggcatcctccaggtccacctgagcacctatttcagatacatcattaagaaatggtagtaagcagttctcc 13008074  T
Q  119 accttcttctgaatggattgttcgaacatgttcttgaatcttttccttccaagaattaaatgaaacattgt 189  Q
    ||||| ||||  || | ||||| ||| | |||||||||  ||||||||   |||| | |||||||||||||    
T  13008075 acctttttcttcatagtttgttggaaaaagttcttgaaggttttccttttgagaaatgaatgaaacattgt 13008145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 13067567 - 13067510
Alignment:
Q  35 gtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcat 92  Q
    ||||||||| | |||||||||||||| ||||||||||  ||||||||||| |||||||    
T  13067567 gtgaacctactcaaggcatcttgcaagtccacctgagaacctgcttcagacacatcat 13067510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 13101775 - 13101860
Alignment:
Q  19 gcaggtgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggta 104  Q
    |||| |||| ||||| ||||||||| ||||| |||| | ||  ||||| ||||| |||  ||||||||||||||||||||| ||||    
T  13101775 gcagatgctgtcaaaagtgaacctactaaagacatcctccaggtccacatgagcacctatttcagatacatcattaagaaacggta 13101860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 264
Target Start/End: Original strand, 31376409 - 31376527
Alignment:
Q  143 aacatgttcttgaatcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaatcagaattgaaaatactacctccaa 242  Q
    |||| ||||||||| |||||||||   |||||| |||||||||||||| ||| || ||||||||   ||| |||||||||||||| ||||| ||||||||    
T  31376409 aacaagttcttgaagcttttccttttgagaattgaatgaaacattgtcctcttctctttccata---cgtgggaatcagaattgacaataccacctccaa 31376505  T
Q  243 gaacttcaaaaatatcatggaa 264  Q
     || ||||||||| || |||||    
T  31376506 aaaattcaaaaatttcttggaa 31376527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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