View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1752_low_8 (Length: 306)
Name: NF1752_low_8
Description: NF1752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1752_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 28216780 - 28217068
Alignment:
| Q |
10 |
aagaatatcattggctatttttaatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccagtacagattgaaattggtccataatc |
109 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
28216780 |
aagaatatcattggctattttcaatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccaatacagattgaaattggtccgtaatc |
28216879 |
T |
|
| Q |
110 |
accttcccaagtaaagcagagcg-----------ccacaagcatatcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagc |
198 |
Q |
| |
|
||||||| |||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
28216880 |
accttccgaagtaaagcacagcgaaggttgtatgccacaagcatctcactagccttttccaacccagactccttcacctcctgcacat-ttttgtgaagc |
28216978 |
T |
|
| Q |
199 |
ttagattgctgtccacaaaacctattccatcgaaactcctgtcccgcagcgatgctttatcagtctcttccattgggacacacgtcttct |
288 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28216979 |
ttagattgctgtccacaaaacccattccatcaaaacacctgtcccacagcgatgctttttcagtctcttccattgggacacacgtcttct |
28217068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 28237652 - 28237906
Alignment:
| Q |
10 |
aagaatatcattggctatttttaatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccagtacagattgaaattggtccataatc |
109 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28237652 |
aagaatatcattggctattttcaatttttctttggttgcattcagttcgtcttggcagttgctttcatgtcctagtacagattgaaattggtccataatc |
28237751 |
T |
|
| Q |
110 |
accttcccaagtaaagcagag-----------cgccacaagcatatcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagc |
198 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28237752 |
accttcccaagtaaagcagagcgaaggttgtacgccacaagcatctcactagctttttccaacccagactccttcacctcctgcacatcttttgcgaagc |
28237851 |
T |
|
| Q |
199 |
ttagattgctgtccacaaaacctattccatcgaaactcctgtcccgcagcgatgc |
253 |
Q |
| |
|
|||||| |||||||||||| | |||||||| || |||| |||| ||||||||| |
|
|
| T |
28237852 |
atagatttctgtccacaaaatccattccatcaaacctcccatcccacagcgatgc |
28237906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 28232823 - 28233112
Alignment:
| Q |
10 |
aagaatatcattggctatttttaatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccagtacagattgaaattggtccataatc |
109 |
Q |
| |
|
|||| |||||||||||||||| |||||| ||||||||||| ||||||||||| ||| |||||| | |||||||| || || ||| ||||||||| ||||| |
|
|
| T |
28232823 |
aagagtatcattggctattttcaattttcctttggttgcaatcagttcgtcttggcagttgctatgatgtcccactaaagcttggaattggtccgtaatc |
28232922 |
T |
|
| Q |
110 |
accttcccaagtaaagcagagcg-----------ccacaagcatatcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagc |
198 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||| ||| |||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
28232923 |
accttcccaagtaaagcagagcgaaggctgtacgccacaagaatctcaccagctttttccaacccagactccttcacctcctgcacgtcttttgtgaagc |
28233022 |
T |
|
| Q |
199 |
ttagattgctgtccacaaaacctattccatcgaaactcctgtcccgcagcgatgctttatcagtctcttccattgggacacacgtcttct |
288 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||| |||||||||||||||| ||||||| |
|
|
| T |
28233023 |
ttagattgctgtccacaaaacccattccatcgaacctcctgtcccacagcgatgctatatcagtcccttccattgggacacaagtcttct |
28233112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University