View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1752_low_9 (Length: 297)
Name: NF1752_low_9
Description: NF1752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1752_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 108795 - 108516
Alignment:
| Q |
18 |
aggagaacaaccaataagaagacnnnnnnnngtgaaagcaactctcttttttgtcagaactcatagccataaaactgagactggaattcgtccaccgtta |
117 |
Q |
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| T |
108795 |
aggagaacaaccaataagaagacaaaaaaaagtgaaagcaactctcttttttgtcagaactcatagccataaaactgagactggaattcgtccaccgtta |
108696 |
T |
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| Q |
118 |
ggtcaaacttaaactttgccaaaagactcgggatatgtaaatcttcgtttgcattagatggatcgtcaaaaacaagtatggaaaaagagatatatctcct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108695 |
ggtcaaacttaaactttgccaaaagactcgggatatgtaaatcttcgtttgcattagatggatcgtcaaaaacaagtatggaaaaagagatatatctcct |
108596 |
T |
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| Q |
218 |
cacatcttcttgttctcatttattaggctaatttttgggacaatttgtacactgtgtctctcttgtatacttatttgatt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108595 |
cacatcttcttgttctcatttattaggctaatttttgggacaatttgtacactgtgtctctcttgtatacttatttgatt |
108516 |
T |
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