View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17530_high_11 (Length: 342)
Name: NF17530_high_11
Description: NF17530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17530_high_11 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 342
Target Start/End: Complemental strand, 5889064 - 5888736
Alignment:
| Q |
14 |
gctgttgctgcatcgaagcaagtagaaaagacagttgaagatttgactattgagttgattgccacaaaagagtctttggaatcagcacattctgcacata |
113 |
Q |
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| T |
5889064 |
gctgttgctgcatcgaagcaagtagaaaagacggttgaagatttgactattgagttgattgccacaaaagagtctttggaatcagcacattctgcacata |
5888965 |
T |
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| Q |
114 |
tggaagcagaagaacacagaataggaacagtcatggcaagagatcaagattctctcaattgggagagggaacttaaacaagaagaacaagaactagaaaa |
213 |
Q |
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| T |
5888964 |
tggaagcagaagaacacagaataggaacagtcatggcaagagatcaagattctctcaattgggagagggaactaaaacaagaagaacaagaactagaaaa |
5888865 |
T |
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| Q |
214 |
actcaatcaaaaaattttgtttgctatggatcttaaatctaaacatagtaaagcttctgtgttgcttcttgatttgaaagctgagttaaatgcctatatg |
313 |
Q |
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| T |
5888864 |
actcaatcaaaaaattttgtttgctatggatcttaaatctaaacatagtaaagcttctgcgttgcttcttgatttgaaagctgagttaaatgcctatatg |
5888765 |
T |
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| Q |
314 |
gaatcaaagtcaaaccaagaaggagatga |
342 |
Q |
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| T |
5888764 |
gaatcaaagtcaaaccaagaaggagatga |
5888736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 342
Target Start/End: Original strand, 46805827 - 46806146
Alignment:
| Q |
23 |
gcatcgaagcaagtagaaaagacagttgaagatttgactattgagttgattgccacaaaagagtctttggaatcagcacattctgcacatatggaagcag |
122 |
Q |
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| T |
46805827 |
gcatccaaggaagtagagaagtcagtggaagatttaactattgaactaatagccacaaaagagtcattagagactgctcatgctgcacacttggaagcag |
46805926 |
T |
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| Q |
123 |
aagaacacagaataggaacagtcatggcaagagatcaagattctctcaattgggagagggaacttaaacaagaagaacaagaactagaaaaactcaatca |
222 |
Q |
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| T |
46805927 |
aggaacaaagaataggaacagtcatggcaagagatcaagattcactcaattgggagaaggaacttaaacaggcagaagaagagctccagagaatcaatga |
46806026 |
T |
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| Q |
223 |
aaaaattttgtttgctatggatcttaaatctaaacatagta-aagcttctgtgttgcttcttgatttgaaagctgagttaaatgcctatatggaatcaaa |
321 |
Q |
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| T |
46806027 |
gcaaatgttgtctgcaaaggatctcaaatctaaac-tggaagcagcctctggtttgctgcttgatttgaaagctaaattaactgtttatatggaatcaaa |
46806125 |
T |
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| Q |
322 |
gtcaaaccaagaaggagatga |
342 |
Q |
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| T |
46806126 |
gttaaagcaagaaggtgatga |
46806146 |
T |
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