View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17530_high_1_N (Length: 684)
Name: NF17530_high_1_N
Description: NF17530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17530_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 29 - 646
Target Start/End: Complemental strand, 29511484 - 29510867
Alignment:
| Q |
29 |
atcctgagtacttgagaacttatcaactcacagaaaagagtgacgtttattcatttggtgtattgcttgttgaaatgatgacaggaagacatccagttga |
128 |
Q |
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| T |
29511484 |
atcctgagtacttgagaacttatcaactcacagaaaagagtgatgtttattcatttggtgtattgcttgttgaaatgatgacaggaagacatccagttga |
29511385 |
T |
|
| Q |
129 |
accaaagaagaaaattgatgagagagtcacaatcagatgggtatgcatgttaaatctcccnnnnnnnnnnnnnnnnnntataatagtacttttacaacat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29511384 |
accaaagaagaaaattgatgagagagtcacaatcagatgggtatgcatgttaaatctcccaaaaacattacaaaaaaatataatagtacttttacaacat |
29511285 |
T |
|
| Q |
229 |
tttttatatgattagagatcaaaccttttccttcggggaagttttatcgattgcggaccatgttgtggcggggtgtgtggagagtcctatattggataat |
328 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29511284 |
tttttatatgattagagatcaaaccttttccttcggtgaagttttatcgattgcggaccatggtgtggcggggtgtgtggagagtcctatattggataat |
29511185 |
T |
|
| Q |
329 |
atatggcttcgaaaatgttataagtgtcagacatacttgactttacaagctagttttgtagagttgaattagctccgagccaaattttaaaaactaaatg |
428 |
Q |
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| T |
29511184 |
atatggcttcgaaaatgttataagtgtcagacatacttgactttacaagctagttttgtagagttgaattagctccgagccaaattttaaaaactaaatg |
29511085 |
T |
|
| Q |
429 |
gctgcatttattagattttatccaaacataatttgcatgtatgcatgcaggcaatgaagatgctcaagaacggagaagctgtgtttgcaatggatccaag |
528 |
Q |
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| T |
29511084 |
gctgcatttattagattttatccaaacataatttgcatgtatgcatgcaggcaatgaagatgctcaagaacggagaagctgtgtttgcaatggatccaag |
29510985 |
T |
|
| Q |
529 |
actgagaagaagtccagcctccatcaaggtagtgaagaaagttttcaagctagcttttcaatgcctggcaccttcaatacattcaaggccacctatgaag |
628 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29510984 |
actgagaagaagtccagcctccatcaaggtagtgaagaaagttttcaagctagcttttcaatgcctggcaccttcaatacattcaaggccacctatgaag |
29510885 |
T |
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| Q |
629 |
aattgtgcacaggttctg |
646 |
Q |
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||||||||| |||||||| |
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| T |
29510884 |
aattgtgcagaggttctg |
29510867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 563 - 637
Target Start/End: Complemental strand, 29505159 - 29505085
Alignment:
| Q |
563 |
aagaaagttttcaagctagcttttcaatgcctggcaccttcaatacattcaaggccacctatgaagaattgtgca |
637 |
Q |
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| T |
29505159 |
aagaaggttttcaaattagcttttcaataccttgcaccttccatacattcaaggccacctatgaagaattgtgca |
29505085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 24915661 - 24915576
Alignment:
| Q |
52 |
caactcacagaaaagagtgacgtttattcatttggtgtattgcttgttgaaatgatgacaggaagacatccagttgaaccaaagaa |
137 |
Q |
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| T |
24915661 |
caactctcggaaaagagtgatgtttattcatttggtgtgttacttgttgaaatcatgacaggaagacatccagttgaaccaaagaa |
24915576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 549
Target Start/End: Complemental strand, 24915370 - 24915274
Alignment:
| Q |
453 |
aacataatttgcatgtatgcatgcaggcaatgaagatgctcaagaacggagaagctgtgtttgcaatggatccaagactgagaagaagtccagcctc |
549 |
Q |
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| T |
24915370 |
aacatagtttgcatgtatatatgcaggcaatgcagttgttaaaacaaggagaagctgtgattgcaatggatccaaggcttaggagaagttcagcctc |
24915274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 11193328 - 11193263
Alignment:
| Q |
37 |
tacttgagaacttatcaactcacagaaaagagtgacgtttattcatttggtgtattgcttgttgaa |
102 |
Q |
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||||||| |||||||||||| || |||||||||||||||||||| || ||||| |||||||||||| |
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| T |
11193328 |
tacttgaaaacttatcaactaaccgaaaagagtgacgtttattcgttcggtgttttgcttgttgaa |
11193263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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