View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17530_high_3 (Length: 423)
Name: NF17530_high_3
Description: NF17530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17530_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 21 - 399
Target Start/End: Complemental strand, 9697854 - 9697476
Alignment:
| Q |
21 |
acatcatcaagacagtggacagcccaaaagctaagcaacattccaggaccatatccaactaacaaatcacactttctcacgtcgtgctcaaattcttcgt |
120 |
Q |
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| T |
9697854 |
acatcatcaagacagtggacagcccaaaagctaagcaacattccaggaccatatccaactaaccaatcacactttctcacgtcgtgctcaaattcttcgt |
9697755 |
T |
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| Q |
121 |
tggaaaaaatttgtttgtctccttcgcctcttctaaataacccctcaatttccgtaccccacatcacaaatatatctgaaccaagagttccatttaaaca |
220 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9697754 |
tggaaaaaatttgtttgtctccttcacctcttctaaataaccccacaatttccgtaccccacatcacaaatatatctgaaccaagagttccatttaaaca |
9697655 |
T |
|
| Q |
221 |
ctgactaatctcaataacagcaacaacacaaaaagaggaccctgtgttcttcccagccctcttggtctttccattatcaacctcactccataacctagca |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9697654 |
ctgactaatctcaataacagcaacaacacaaaaagaggaccctgtgttcttcccagccctcttggtctttccattatcaacctcactccataacctagca |
9697555 |
T |
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| Q |
321 |
gttccatctaagcagcatgtcagtaatacattcccttttgaatacctactgtatctgtttgatagtcttccccttgatg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9697554 |
gttccatctaagcagcatgtcagtaatacattcccttttgaatacctactgtatctgtttgatagtcttccccttgatg |
9697476 |
T |
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