View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17530_high_5 (Length: 371)
Name: NF17530_high_5
Description: NF17530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17530_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 17075403 - 17075755
Alignment:
| Q |
1 |
atggtgacgctggtgttatt-cttcggcaaggaagaaggttaagaaagtggtgtggcctagtgcaaaacccagttccatcgttaataagaggaagaaagt |
99 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| | |||| || ||||| |||||||||| ||| |||||||||| |
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| T |
17075403 |
atggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgcggcccattgcacaatccagtaccatcgttaacaagcggaagaaagt |
17075502 |
T |
|
| Q |
100 |
gaatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttccaccgttttacatattttaaaatctaaatcg |
199 |
Q |
| |
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||| || || ||||| ||||||||||||||| |||| |||||||||||| ||||||| |||||||||||| | |||||||| || ||||||||||||| | |
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| T |
17075503 |
gaacggaattttgcgacactcggtgattagtctgaaaaaggtggcgcggctgcctagcaaagatcgttcctcagttttacacatcttaaaatctaaattg |
17075602 |
T |
|
| Q |
200 |
agaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaacaatgatt |
299 |
Q |
| |
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|||||||||||||| ||||| || |||||||||||||||| |||||||| ||||||| ||||||||||||||| || |||||||| ||||||||||||| |
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| T |
17075603 |
agaaaattacaaggctcggaacgccttaaaaaggcggtaaaagtggtttcttcgggagcttcggatggtagttcgtcatcggggtccgttaacaatgatt |
17075702 |
T |
|
| Q |
300 |
gggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgatgtc |
352 |
Q |
| |
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|||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |
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| T |
17075703 |
gggttaattgggtggcagtgcatggaaatgagaaggttgtgtttgatgatgtc |
17075755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11053477 - 11053702
Alignment:
| Q |
1 |
atggtgacgctggtgttatt-cttcggcaaggaagaaggttaagaaagtggtgtggcctagtgcaaaacccagttccatcgttaataagaggaagaaagt |
99 |
Q |
| |
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|||||||||||||||||||| | |||||||| ||||||||||||||||||||| |||||| ||| || || || | | || || |||||||||| |
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|
| T |
11053477 |
atggtgacgctggtgttatttcatcggcaagaaagaaggttaagaaagtggtgcggcctattgcccaatccggtatctgtgcaaacaatcggaagaaagt |
11053576 |
T |
|
| Q |
100 |
gaatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttccaccgttttacatattttaaaatctaaatcg |
199 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||| |
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|
| T |
11053577 |
gaatggggttctgcggcactcggtgattagtttgaaaaaggtggcgcggttgcctagcaaagatcggtccaccattttacatatcttaaaatctaaatcg |
11053676 |
T |
|
| Q |
200 |
agaaaattacaaggttcggatcgtct |
225 |
Q |
| |
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|| |||||||||||||| || ||||| |
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| T |
11053677 |
aggaaattacaaggttcagaccgtct |
11053702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 221 - 351
Target Start/End: Original strand, 11064036 - 11064166
Alignment:
| Q |
221 |
cgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaacaatgattgggttaattgggtggctgtgc |
320 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||| ||||||||| ||||||||||||||||| || ||||| ||||||||||| ||||||||||| |||| |
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|
| T |
11064036 |
cgtcttaaaaaggtggttaaggtggtttcctcggaagtttcggaaggtagttcctcgtcgggatcggttaataatgattgggtcaattgggtggcagtgc |
11064135 |
T |
|
| Q |
321 |
atgggaatgagaaggttgtgattgatgatgt |
351 |
Q |
| |
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||| ||||||||| || ||| |||||||||| |
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| T |
11064136 |
atgagaatgagaaagtagtggttgatgatgt |
11064166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 90 - 351
Target Start/End: Complemental strand, 17684166 - 17683905
Alignment:
| Q |
90 |
ggaagaaagtgaatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttccaccgttttacatattttaaa |
189 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||||||||||||| ||||| |
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|
| T |
17684166 |
ggaagaaagtgaatggggttttgcggcactcggtgattagtttgaaaaaggtggcgcagttgcctagcaaagatcggtccaccgttttacatatcttaaa |
17684067 |
T |
|
| Q |
190 |
atctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagtt |
289 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| |||| ||| |
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|
| T |
17684066 |
atctaaatcgaggaaattacaaggttcagaccgtcttaaaaaggtggtaaaggtggtttcctcgggagtttcggaaggtagttcctcgtcgaggtcggtt |
17683967 |
T |
|
| Q |
290 |
aacaatgattgggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgatgt |
351 |
Q |
| |
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|| ||||||||||||||||||||||| ||||||||||||||||| || | | |||||||||| |
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| T |
17683966 |
aataatgattgggttaattgggtggcagtgcatgggaatgagaaagtagcggttgatgatgt |
17683905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 336
Target Start/End: Complemental strand, 36160146 - 36159902
Alignment:
| Q |
92 |
aagaaagtgaatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttccaccgttttacatattttaaaat |
191 |
Q |
| |
|
||||||||| |||| |||||||| || ||||||| ||||||||| || ||||| |||| || | || ||| | || || ||||| || ||| |||||| |
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|
| T |
36160146 |
aagaaagtggatggtatcttgcgacattcggtgaatagtttgaaaaaagtggcaaggttaccgaccaatgattgatcaacagttttgcacattctaaaat |
36160047 |
T |
|
| Q |
192 |
ctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaa |
291 |
Q |
| |
|
||||| | ||||||||||| || ||||||||||| ||||||||||| | ||||| || ||||||| ||| ||| ||||| || || | |||||||| |
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| T |
36160046 |
ctaaagctagaaaattacatgggtcggatcgtctgaaaaaggcggtgaaggtggggtcttcgggagcttcagataaaagttcttcttcatgttcagttaa |
36159947 |
T |
|
| Q |
292 |
caatgattgggttaattgggtggctgtgcatgggaatgagaaggt |
336 |
Q |
| |
|
||| ||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
36159946 |
caacgattgggttaattttgtggttgtgcatgggaatgagaaggt |
36159902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17684256 - 17684197
Alignment:
| Q |
1 |
atggtgacgctggtgtta-ttcttcggcaaggaagaaggttaagaaagtggtgtggccta |
59 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| |||||||| | |||||||||| |||||| |
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|
| T |
17684256 |
atggtgacgctggtgttatttcatcggcaagaaagaaggtcaggaaagtggtgcggccta |
17684197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 69 - 349
Target Start/End: Original strand, 10559722 - 10560002
Alignment:
| Q |
69 |
ccagttccatcgttaataagaggaagaaagtgaatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttc |
168 |
Q |
| |
|
||||| |||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| || | ||||||| ||||||| || |
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|
| T |
10559722 |
ccagtaccattgttaacaagaggaagaaagtgaatgggtttctgcggcactcggtgattagtttgaaaaaggtggggcagctgcctagcaaagatcaatc |
10559821 |
T |
|
| Q |
169 |
caccgttttacatattttaaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggt |
268 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||||||||| ||||||| ||| |||||| |
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|
| T |
10559822 |
caccgttttacacatcttaaaatctaaatcgagaaaattacaaggatcagatcgtctcaaaaaggcggtaaaggtggtttcttcgggagcttcagatggt |
10559921 |
T |
|
| Q |
269 |
agttcctcgtcggggtcagttaacaatgattgggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgat |
349 |
Q |
| |
|
||||| || ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
10559922 |
agttcttcctcgggttcagataacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtagttgatgat |
10560002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10558427 - 10558491
Alignment:
| Q |
1 |
atggtgacgctggtgttatt-cttcggcaaggaagaaggttaagaaagtggtgtggcctagtgca |
64 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||| |||| |
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|
| T |
10558427 |
atggtgacgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggcctattgca |
10558491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 26741886 - 26741535
Alignment:
| Q |
1 |
atggtgacgctggtgttatt-cttcggcaaggaagaaggttaagaaagtggtgtggcctagtgcaaaacccagttccatcgttaataagaggaagaaagt |
99 |
Q |
| |
|
||||||| |||||||||||| | ||||| |||||||||||||||| ||||| | ||||| ||| || | || || | ||||| ||| |||||||||| |
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|
| T |
26741886 |
atggtgatgctggtgttatttcatcggctaggaagaaggttaagagagtggcgcagcctattgctcaatcatgtacctttgttaacaagcggaagaaagt |
26741787 |
T |
|
| Q |
100 |
gaatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttccaccgttttacatattttaaaatctaaatcg |
199 |
Q |
| |
|
||||| |||||| ||| || |||||||||||||||| ||||||| ||| |||| | |||||||||||||| |||||||| || ||||||||||| ||| |
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|
| T |
26741786 |
gaatgagatcttacggaacccggtgattagtttgaaaaaggtggatcggctgccctgcaaagatcgttccacagttttacacatcttaaaatctaagtcg |
26741687 |
T |
|
| Q |
200 |
agaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaacaatgatt |
299 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||| || ||||| ||||||||||| |||| |
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|
| T |
26741686 |
agaaaattacaaggatcggatcgtcttaagaaggctgtaagggtggtttcttcgggagcttcggatggtagttcttcctcgggttcagttaacaacgatt |
26741587 |
T |
|
| Q |
300 |
gggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgatgt |
351 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
26741586 |
gggttaattgggtggaagtgcatgggaatgagaaggttgtggttgatgatgt |
26741535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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