View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17530_high_7 (Length: 360)

Name: NF17530_high_7
Description: NF17530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17530_high_7
NF17530_high_7
[»] chr6 (22 HSPs)
chr6 (5-326)||(2983418-2983744)
chr6 (52-327)||(2935150-2935429)
chr6 (51-327)||(2929860-2930138)
chr6 (51-331)||(2974554-2974828)
chr6 (2-294)||(2965111-2965413)
chr6 (85-331)||(2996658-2996904)
chr6 (36-326)||(2938012-2938286)
chr6 (51-234)||(2954726-2954911)
chr6 (169-317)||(2927721-2927869)
chr6 (2-189)||(2986421-2986624)
chr6 (144-301)||(2658311-2658474)
chr6 (186-327)||(3003174-3003311)
chr6 (186-331)||(2952483-2952624)
chr6 (1-116)||(2927882-2928002)
chr6 (3-136)||(2658141-2658278)
chr6 (52-177)||(2952657-2952778)
chr6 (51-177)||(3003016-3003141)
chr6 (2-49)||(3002948-3002995)
chr6 (2-51)||(2952798-2952847)
chr6 (2-51)||(2974847-2974896)
chr6 (2-51)||(2935449-2935498)
chr6 (2-39)||(2954942-2954979)
[»] chr7 (1 HSPs)
chr7 (56-327)||(3339576-3339850)
[»] scaffold0024 (2 HSPs)
scaffold0024 (72-331)||(34513-34773)
scaffold0024 (51-136)||(43599-43687)
[»] chr3 (2 HSPs)
chr3 (51-326)||(49618963-49619249)
chr3 (49-325)||(49613989-49614269)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 326
Target Start/End: Complemental strand, 2983744 - 2983418
Alignment:
Q  5 tcagacccattttgttcgacaacaatacaacatgatcaagttgctttatttatatgaaagtacaatttcaatctaat---acaacacacaaaata--atg 99  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    ||||||||| |||||  |||    
T  2983744 tcagaccaattttgtttaacaacaatacaacatgatcaagttgctttatttatatgaaattacaatttcaatctaagtacacaacacacgaaatataatg 2983645  T
Q  100 aaaccattgaaacaaacgaggtacattggtgataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgca 199  Q
    ||||||||||||||||| | |||||| |||||||||   |||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||    
T  2983644 aaaccattgaaacaaacaacgtacatgggtgataatgagaataacaataattatgaactcaacaatgaaagaaatgactaggatgcttgtactatttgca 2983545  T
Q  200 agacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttag 299  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||| | | |||||||||||||| |||||||||||| ||    
T  2983544 agacagaacaaactgtttgaattatagtgagaacaagtagtaagactccagcaacggaagcagcaattttccaaggagtattgccataatcacgcctgag 2983445  T
Q  300 agcagccttcaacttatgccaaggatt 326  Q
    ||  ||||||||||||| || ||||||    
T  2983444 agtggccttcaacttattcctaggatt 2983418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 52 - 327
Target Start/End: Complemental strand, 2935429 - 2935150
Alignment:
Q  52 atttatatgaaagtacaatttcaatctaatacaacacacaaa-ataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataat 150  Q
    |||||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| | ||||||||   ||||||||||||| ||||||    
T  2935429 atttatatgaaattacaatttcaatctaatgcaacacaaaaagataatgaaaccattgaaacaaacaacgtacattgaaaataatactaatagaaataat 2935330  T
Q  151 tatgaactcaacaatgaaagaaatcactaggaggcttgt---actacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattc 247  Q
    |||||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||| ||||| || |||||||| ||| ||||||||||    
T  2935329 tatgaactcaacaatgaaagaaatcactaggaggcttgttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaaaaagtagtaagattc 2935230  T
Q  248 cagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggattc 327  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||    
T  2935229 cagcaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgccaaggattc 2935150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 51 - 327
Target Start/End: Complemental strand, 2930138 - 2929860
Alignment:
Q  51 tatttatatgaaagtacaatttcaatctaatacaacacacaaaataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataat 150  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||  |||| |||||||    
T  2930138 tatttatatgaaattacaattttgatctaatacaacacacaaaataatgaaaccattgaaacaaacaacgtacattggtgataataagaataacaataat 2930039  T
Q  151 tatgaactcaacaatgaaagaaatca--ctaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattcc 248  Q
    ||||||||||||||| ||||||||||  ||||||||||||||| |||||||||||||||||||||| ||||| || |||||||| ||| ||||||| |||    
T  2930038 tatgaactcaacaataaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaaaaagtagtaagaatcc 2929939  T
Q  249 agcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggattc 327  Q
    |||||||||||||||||| |||||||||||| | |||||||||||||| |||| |||||||||| ||||||||||||||    
T  2929938 agcaatggaagcagcagtttgccaaggagtacttcaataatcacgcctgagagtagccttcaacctatgccaaggattc 2929860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 51 - 331
Target Start/End: Complemental strand, 2974828 - 2974554
Alignment:
Q  51 tatttatatgaaagtacaatttcaatctaatacaacacacaaa-ataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataa 149  Q
    ||||||||||||| || |||||||||||||| ||||||| ||| |||||||||| |||||||||||| | ||||||||      ||| ||||   |||||    
T  2974828 tatttatatgaaattataatttcaatctaatgcaacacaaaaagataatgaaac-attgaaacaaacaacgtacattg------ataataatgaaaataa 2974736  T
Q  150 ttatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattcca 249  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| || || ||||||    
T  2974735 ttatgaactcaacaatgaaagaaatcactaggatgcttgtactacttgcaagacagaacaaactctttgaattatagtgagaacaagtagaaaaattcca 2974636  T
Q  250 gcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggattcctac 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2974635 gcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacctatgccaaggattcctac 2974554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 294
Target Start/End: Complemental strand, 2965413 - 2965111
Alignment:
Q  2 ctatcagacccattttgttcgacaacaatacaacatgatcaagttgctttatttatatgaaagtacaatttcaatctaat---acaacacacaaaa--ta 96  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    |||||||||||||  ||    
T  2965413 ctatcagaccaattttgttcaacaacaatacaacatgatcaagttgctttatttatatgaaattacaatttcaatctaaggacacaacacacaaaagata 2965314  T
Q  97 atgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggc---------tt 187  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         ||    
T  2965313 atgaaaccattgaaacaaacaacgtacattggtgataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaagcattaggttgtt 2965214  T
Q  188 gtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaata 287  Q
    ||||||||||||    |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||  |||||||||||| |||| ||    
T  2965213 gtactacttgca----agaacaaactgtttgaattaaagtgagaacaagtagtaagattccagcaaaggaagcagcagcttgccaaggagtactgcagta 2965118  T
Q  288 atcacgc 294  Q
    |||||||    
T  2965117 atcacgc 2965111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 85 - 331
Target Start/End: Original strand, 2996658 - 2996904
Alignment:
Q  85 acacacaaaataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggagg 184  Q
    |||| ||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2996658 acacccaaaataatgaaaccattgaaacaaacaacttacattggtgataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggagg 2996757  T
Q  185 cttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgca 284  Q
    ||||||| |||||||||||||||||||||| |||||| | |||||||||||| ||||  |||||||||| |||||||||||  ||||||||||| ||||     
T  2996758 cttgtacaacttgcaagacagaacaaactgattgaataaaagtgagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgcc 2996857  T
Q  285 ataatcacgccttagagcagccttcaacttatgccaaggattcctac 331  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||    
T  2996858 ataatcacgcctgagagtagccttcaacttatgccaaggattcctac 2996904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 36 - 326
Target Start/End: Complemental strand, 2938286 - 2938012
Alignment:
Q  36 atgatcaagttgctttatttatatgaaagtacaatttcaatctaatacaacacacaaaataatgaaaccattgaaacaaacgaggtacattggtgataat 135  Q
    |||||||||||| ||||||||||| ||| |||| |||| |||||| |||||||||||||||||||||| |||||||||||| | |||||||             
T  2938286 atgatcaagttgttttatttatatcaaattacattttcgatctaacacaacacacaaaataatgaaac-attgaaacaaacaacgtacatt--------- 2938197  T
Q  136 actaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaa 235  Q
          | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||| ||    
T  2938196 ------aacaataattatgaactcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaataa 2938103  T
Q  236 gcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggatt 326  Q
    | ||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| |||| ||||||||||||||||||||||||    
T  2938102 gtagtaagattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttatgccaaggatt 2938012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 51 - 234
Target Start/End: Complemental strand, 2954911 - 2954726
Alignment:
Q  51 tatttatatgaaagtacaatttcaatctaat---acaacacacaaaataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaat 147  Q
    ||||||||||||| |||||| || ||||||    ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||    
T  2954911 tatttatatgaaattacaatatcgatctaagtacacaacacacaaaataatgaaaccatagaaacaaacaagttacattggtgataatactaatagcaat 2954812  T
Q  148 aattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaaca 234  Q
    ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||| ||||    
T  2954811 aat-atgaactcaacattgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaattgattgaagtaaagtgataaca 2954726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 169 - 317
Target Start/End: Complemental strand, 2927869 - 2927721
Alignment:
Q  169 agaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgt 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||| ||||||||||| ||||||||||||||||| |    
T  2927869 agaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtaagattcccgcaatggaagcagcagttt 2927770  T
Q  269 gccaaggagtattgcaataatcacgccttagagcagccttcaacttatg 317  Q
    |||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  2927769 gccaaggagttttgcaataatcacgcctgagagtagccttcaacttatg 2927721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 2986624 - 2986421
Alignment:
Q  2 ctatcagacccattttgttcgacaacaatacaacatgatcaagttgctttatttatatgaaagtacaatttcaatctaatacaacacacaaaataatgaa 101  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| | |||||||||| |||||||    
T  2986624 ctatcagacccattttgttcaacaacaatacaacatgatcaagttgatttatttatatgaaattacaatttcgatctaacaaaacacacaaactaatgaa 2986525  T
Q  102 accattgaaacaaacgaggtacattggtgataa----------------tactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggc 185  Q
    ||||||||||||||| | |||| ||||||||||                || ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2986524 accattgaaacaaacaatgtacgttggtgataataataataataataattaataataacaataattatgaactcaacaatgaaagaaatcactaggaggc 2986425  T
Q  186 ttgt 189  Q
    ||||    
T  2986424 ttgt 2986421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 144 - 301
Target Start/End: Original strand, 2658311 - 2658474
Alignment:
Q  144 caataattatgaactcaacaatgaaagaaatcactaggaggc------ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagc 237  Q
    ||||||||||||||  |||||||||||||||||||||||| |      |||||||||||| |||||||||||||||||||||||||||||||||| |||     
T  2658311 caataattatgaaccgaacaatgaaagaaatcactaggagccattaggttgtactacttgaaagacagaacaaactgtttgaattatagtgagaataagt 2658410  T
Q  238 agtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagag 301  Q
    |||||||||||||||| ||||||| |||  | |||||||||| |||||||||||||||| ||||    
T  2658411 agtaagattccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagag 2658474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 186 - 327
Target Start/End: Original strand, 3003174 - 3003311
Alignment:
Q  186 ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaa 285  Q
    |||||||||||||||||    |||||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  3003174 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtaagattccagcaatggaagcagcagtttgccagggagttttgcaa 3003269  T
Q  286 taatcacgccttagagcagccttcaacttatgccaaggattc 327  Q
    ||||||||||| |||| |||||||||||||||||| ||||||    
T  3003270 taatcacgcctgagagtagccttcaacttatgccatggattc 3003311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 186 - 331
Target Start/End: Complemental strand, 2952624 - 2952483
Alignment:
Q  186 ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaa 285  Q
    |||||||||||||||||    |||||||||||||| || ||||||| |||| |||| |||||||||||||||||||||||| ||||||||||| |||| |    
T  2952624 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgcca 2952529  T
Q  286 taatcacgccttagagcagccttcaacttatgccaaggattcctac 331  Q
    ||||||||||| ||||  || |||||||||| ||||||||| ||||    
T  2952528 taatcacgcctcagagtggctttcaacttattccaaggattactac 2952483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 2928002 - 2927882
Alignment:
Q  1 gctatcagacccattttgttcgacaacaatacaacatgatcaagttgctttatttatatgaaagtacaatttcaatcta---atacaacacacaaa--at 95  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||   | ||||||||||||  ||    
T  2928002 gctatcagacccattttgttcaacaacaatacaacatgatcaagttgatttatttatatgaaattataatttcaatctaagtacacaacacacaaaagat 2927903  T
Q  96 aatgaaaccattgaaacaaac 116  Q
    ||||||||||||| |||||||    
T  2927902 aatgaaaccattggaacaaac 2927882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 2658141 - 2658278
Alignment:
Q  3 tatcagacccattttgttcgacaacaatacaacatgatcaagttgctttatttatatgaaagtacaatttcaatcta---atacaacacacaaa--ataa 97  Q
    ||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||   | ||||||||||||  ||||    
T  2658141 tatcaaacccattttgtgcaacaacaatagaacatgatcaagttgctttatttatatgaaattacaatttcaatataagtacacaacacacaaaagataa 2658240  T
Q  98 tgaaaccattgaaacaaacgaggtacattggtgataata 136  Q
    ||||| ||||||||||||| | ||||||||| |||||||    
T  2658241 tgaaa-cattgaaacaaacaacgtacattggcgataata 2658278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 177
Target Start/End: Complemental strand, 2952778 - 2952657
Alignment:
Q  52 atttatatgaaagtacaatttcaatctaatacaacacacaaaa--taatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataa 149  Q
    |||||||||||| ||||||||||||||||| ||||||| | |   |||||||||||||||||||||| | ||||||||   |||||| |||||   ||||    
T  2952778 atttatatgaaattacaatttcaatctaatgcaacacaaagagattaatgaaaccattgaaacaaacaacgtacattg---ataataataata---ataa 2952685  T
Q  150 ttatgaactcaacaatgaaagaaatcac 177  Q
    ||||||||||||||||||||||||||||    
T  2952684 ttatgaactcaacaatgaaagaaatcac 2952657  T

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Target: chr6; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 3003016 - 3003141
Alignment:
Q  51 tatttatatgaaagtacaatttcaatctaatacaacacacaaa-ataatgaaac-cattgaaacaaacgaggtacattggtgataatactaatagcaata 148  Q
    ||||||||||||| |||||||||||||| || ||||||| ||| ||||||||||  |||||||||||| | |||||||| |||||||| ||||   ||||    
T  3003016 tatttatatgaaattacaatttcaatctgatgcaacacaaaaagataatgaaacatattgaaacaaactacgtacattgatgataataataat---aata 3003112  T
Q  149 attatgaactcaacaatgaaagaaatcac 177  Q
    |||||||||| |||||||||||| |||||    
T  3003113 attatgaacttaacaatgaaagacatcac 3003141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 3002948 - 3002995
Alignment:
Q  2 ctatcagacccattttgttcgacaacaatacaacatgatcaagttgct 49  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  3002948 ctatcagacccattttgttcaacaacaatacaacatgatcaagttgct 3002995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 2952847 - 2952798
Alignment:
Q  2 ctatcagacccattttgttcgacaacaatacaacatgatcaagttgcttt 51  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  2952847 ctatcagaccaattttgttcaacaacaatacaacatgatcaagttgcttt 2952798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 2974896 - 2974847
Alignment:
Q  2 ctatcagacccattttgttcgacaacaatacaacatgatcaagttgcttt 51  Q
    ||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  2974896 ctatcaggccaattttgttcaacaacaatacaacatgatcaagttgcttt 2974847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 2935498 - 2935449
Alignment:
Q  2 ctatcagacccattttgttcgacaacaatacaacatgatcaagttgcttt 51  Q
    |||||||||| ||||||||| |||||||||||||||||||||  ||||||    
T  2935498 ctatcagaccaattttgttcaacaacaatacaacatgatcaatatgcttt 2935449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 2954979 - 2954942
Alignment:
Q  2 ctatcagacccattttgttcgacaacaatacaacatga 39  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  2954979 ctatcagacccattttgttcaacaacaataaaacatga 2954942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 56 - 327
Target Start/End: Complemental strand, 3339850 - 3339576
Alignment:
Q  56 atatgaaagtacaatttcaatctaatacaacacacaaa-ataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataattatg 154  Q
    |||| ||| ||||||||| ||||||| ||||||| ||| |||||||||| || ||||||||| | |||||||| | |||||||||| |||||||||||||    
T  3339850 atataaaattacaatttcgatctaatgcaacacaaaaagataatgaaac-atggaaacaaacaacgtacattgataataatactaagagcaataattatg 3339752  T
Q  155 a---actcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagc 251  Q
    |   ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||||| ||||  ||||||||    
T  3339751 atgaactcaacaaagaaagaaatcactaggaggcctgtactacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtacaattccagc 3339652  T
Q  252 aatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggattc 327  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||  ||||||||| ||||||||||||||    
T  3339651 aatggaagcagcagtttgccaaggagtattgcaataatcacgcctgagagtggccttcaacctatgccaaggattc 3339576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 72 - 331
Target Start/End: Original strand, 34513 - 34773
Alignment:
Q  72 tcaatctaatacaacacacaaaa--taatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataattatgaactcaacaatgaaa 169  Q
    |||||||||| ||||||  ||||  ||||||||| ||||||||||||   ||| |||| | |||||||||||||||||||||||||||||||||||||||    
T  34513 tcaatctaatgcaacaccaaaaagataatgaaac-attgaaacaaacagcgtaaattgataataatactaatagcaataattatgaactcaacaatgaaa 34611  T
Q  170 gaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtg 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||  | |||||||||||| ||||| |||||||||| |||||||||||| ||    
T  34612 gaaatcactaggaggcttgtactacttgcaagacagaacaaactgattgaagcaaagtgagaacaagtagtaaaattccagcaacggaagcagcagtttg 34711  T
Q  270 ccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggattcctac 331  Q
    ||||||||| |||| |||||||||||| |||| |||||||||| ||| ||||||||| ||||    
T  34712 ccaaggagttttgccataatcacgcctgagagaagccttcaacctattccaaggattactac 34773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 43599 - 43687
Alignment:
Q  51 tatttatatgaaagtacaatttcaatctaat---acaacacacaaaataatgaaaccattgaaacaaacgaggtacattggtgataata 136  Q
    ||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  43599 tatttatatgaaattacaatttcaatctaattacacaacacacaaaataatgaaaccattgaaacaaacaacgtacattggtgataata 43687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 51 - 326
Target Start/End: Complemental strand, 49619249 - 49618963
Alignment:
Q  51 tatttatatgaaagtacaatttcaatctaatacaacacacaaaataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataat 150  Q
    ||||||||| | | || |||||||||||||||||||| |||  ||||||||||||||| ||||||| | ||| |||||||||||   ||||  |||||||    
T  49619249 tatttatataatattagaatttcaatctaatacaacaaacatgataatgaaaccattggaacaaacaacgtaaattggtgataa---taatgtcaataat 49619153  T
Q  151 tatgaactcaacaatgaaagaaatcactaggag-gct-------------tgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaag 236  Q
     ||||||||||||||||  ||| | ||||  ||  ||             ||||| |||||||||| ||||||||||| ||||| || || |||||||||    
T  49619152 catgaactcaacaatgattgaacttactactagtacttacattatactgctgtacaacttgcaagatagaacaaactgattgaagtaaagagagaacaag 49619053  T
Q  237 cagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggatt 326  Q
     ||||| ||||||||||||||||||||||| |||||||||||| ||| |||||||||||| |||| ||||||||  ||||||||||||||    
T  49619052 tagtaaaattccagcaatggaagcagcagtttgccaaggagtactgccataatcacgcctgagagtagccttcagtttatgccaaggatt 49618963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 49 - 325
Target Start/End: Complemental strand, 49614269 - 49613989
Alignment:
Q  49 tttatttatatgaaagtacaatttcaatctaatacaacacacaaaataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaata 148  Q
    ||||||||||||||  | ||||||||||||| |||||||  ||||||||||||||||||||||||       || |||||| |||||| ||||  |||||    
T  49614269 tttatttatatgaagttgcaatttcaatctagtacaacatgcaaaataatgaaaccattgaaacact-----taaattggtaataataataatcacaata 49614175  T
Q  149 attatgaactcaacaatgaaagaaatcactaggaggc---------ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcag 239  Q
    |||||||| ||||||||||  ||| | |||| ||  |         |||||| |||||||| || | |||||||| ||||| || || ||||| ||| ||    
T  49614174 attatgaattcaacaatgattgaacttactatgaatcattatattgttgtacaacttgcaacactgcacaaactgattgaagtaaagagagaataagtag 49614075  T
Q  240 taagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggat 325  Q
    ||| ||||||||||||||||||||||| ||||||||| | |||||||||||||| || ||||  ||||||||  ||||||||||||    
T  49614074 taaaattccagcaatggaagcagcagtttgccaaggactgttgcaataatcacgtctgagagtcgccttcaatctatgccaaggat 49613989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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