View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17530_low_2 (Length: 240)
Name: NF17530_low_2
Description: NF17530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17530_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 29511325 - 29511484
Alignment:
| Q |
64 |
gggagatttaacatgcatacccatctgattgtgactctctcatcaattttcttctttggttcaactggatgtcttcctgtcatcatttcaacaagcaata |
163 |
Q |
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| T |
29511325 |
gggagatttaacatgcatacccatctgattgtgactctctcatcaattttcttctttggttcaactggatgtcttcctgtcatcatttcaacaagcaata |
29511424 |
T |
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| Q |
164 |
caccaaatgaataaacgtcactcttttctgtgagttgataagttctcaagtactcaggat |
223 |
Q |
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| T |
29511425 |
caccaaatgaataaacatcactcttttctgtgagttgataagttctcaagtactcaggat |
29511484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 29511276 - 29511306
Alignment:
| Q |
15 |
atataaaaaatgttgtaaaagtactattata |
45 |
Q |
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| T |
29511276 |
atataaaaaatgttgtaaaagtactattata |
29511306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 24915576 - 24915661
Alignment:
| Q |
115 |
ttctttggttcaactggatgtcttcctgtcatcatttcaacaagcaatacaccaaatgaataaacgtcactcttttctgtgagttg |
200 |
Q |
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| T |
24915576 |
ttctttggttcaactggatgtcttcctgtcatgatttcaacaagtaacacaccaaatgaataaacatcactcttttccgagagttg |
24915661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 11193263 - 11193328
Alignment:
| Q |
150 |
ttcaacaagcaatacaccaaatgaataaacgtcactcttttctgtgagttgataagttctcaagta |
215 |
Q |
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| T |
11193263 |
ttcaacaagcaaaacaccgaacgaataaacgtcactcttttcggttagttgataagttttcaagta |
11193328 |
T |
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