View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17531_high_10 (Length: 356)
Name: NF17531_high_10
Description: NF17531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17531_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 25 - 355
Target Start/End: Original strand, 38729529 - 38729855
Alignment:
| Q |
25 |
catcaaaacatcactagctgtcacatccacagaatatcccatggtcttcatttcaagtagaactttggcagcaacattcacaagcttcttattagccagt |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| |
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| T |
38729529 |
catcaaaacatcactagctgtcacatccacagaatatcccattgtcttcatttcaagtagaactttggcagcaacatccaccagcttcttattagcaagt |
38729628 |
T |
|
| Q |
125 |
agagataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcattgaattgtacagtttgatggcacgatcaatttgtccagacgcag |
224 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||||||||||| |
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| T |
38729629 |
agagataaaagaacagtataagtgctcaggcctggccttaaacctgcattagtcattgaattgtacagtttcatagcatgatcgatttgtccagacgcag |
38729728 |
T |
|
| Q |
225 |
catgcatttccaagagacaagcatacgtagatggagttggtagaaatccagctttctccatatatatctgaaaatgcagacatatcaatatcaagcttcc |
324 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
38729729 |
catgcatttccaagagacaagcatatgtagatggagttggtagaaatccagctttctcc----atatctgaaaatgcagacatagcaatatcaagcttcc |
38729824 |
T |
|
| Q |
325 |
ctgattttgcatgtgactcaatgatcaatgt |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
38729825 |
ctgattttgcatgtgactcaatgatcaatgt |
38729855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 25 - 355
Target Start/End: Complemental strand, 386013 - 385687
Alignment:
| Q |
25 |
catcaaaacatcactagctgtcacatccacagaatatcccatggtcttcatttcaagtagaactttggcagcaacattcacaagcttcttattagccagt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
386013 |
catcaaaacatcactagctgtcacatccacagaatatcccatcgtcttcatttcaagtagaactttggcagcaacatccacaagcttcttattagccagt |
385914 |
T |
|
| Q |
125 |
agagataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcattgaattgtacagtttgatggcacgatcaatttgtccagacgcag |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || | || |
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|
| T |
385913 |
agagataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcattgaattgtacagtttcatggcatgatcaatttgtccggatgaag |
385814 |
T |
|
| Q |
225 |
catgcatttccaagagacaagcatacgtagatggagttggtagaaatccagctttctccatatatatctgaaaatgcagacatatcaatatcaagcttcc |
324 |
Q |
| |
|
||||||||||||| |||||||| || |||||| ||||| |||||||||||||||||||| || |||||||||||||||||| ||||||||||||||| |
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| T |
385813 |
catgcatttccaatagacaagcgtatgtagatagagttagtagaaatccagctttctcc----atgtctgaaaatgcagacatagcaatatcaagcttcc |
385718 |
T |
|
| Q |
325 |
ctgattttgcatgtgactcaatgatcaatgt |
355 |
Q |
| |
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||||||||||||| ||||| ||||||||||| |
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|
| T |
385717 |
ctgattttgcatgagactcgatgatcaatgt |
385687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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