View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17531_high_17 (Length: 318)
Name: NF17531_high_17
Description: NF17531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17531_high_17 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 30010163 - 30010470
Alignment:
| Q |
1 |
tgtttgagagttttcgattagaattgattttgactatagaaattgattatataggattagtagattttattgctcaaatttattattcaactcagtttca |
100 |
Q |
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| T |
30010163 |
tgttcgagagttttcgattagaattgattttgactatagaaattgattatataggattagtagattttattgctcaaatttattattcaactcagtttca |
30010262 |
T |
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| Q |
101 |
tgtgaatcaatccaaacataaatcattataccctgaattgattttaactaaaaatgaattttaaaaatttaattcagtcataatcaattttcgccgctta |
200 |
Q |
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| T |
30010263 |
tgtgaatcaatccaaacataaatcattataccctaaattgattttaactaaaaatgaattttaaaaatttaattcagtcataatcaattttcgccgctta |
30010362 |
T |
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| Q |
201 |
gaaccatatataccactacatctaatctgtaataaatttgacnnnnnnnnnnnnnnnnnngcttctaaatttcaggtgtttggggtgttacatttgattg |
300 |
Q |
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| T |
30010363 |
gaaccatatataccactacatctaatctgtaataaatttgactttttttggaatttttttgcttctaaatttcaggtgtttggggtgttacatttgattg |
30010462 |
T |
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| Q |
301 |
tgtctctg |
308 |
Q |
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| T |
30010463 |
tgtctctg |
30010470 |
T |
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Target: scaffold0361 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 14143 - 14091
Alignment:
| Q |
73 |
ctcaaatttattattcaactcagtttcatgtgaatcaatccaaacataaatca |
125 |
Q |
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| T |
14143 |
ctcaaatttatttttcaactcactttcacatgaatgtatccaaacataaatca |
14091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 28228905 - 28228961
Alignment:
| Q |
71 |
tgctcaaatttattattcaactcagtttcatgtgaatcaatccaaacataaatcatt |
127 |
Q |
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| T |
28228905 |
tgctcaaatttattgtttaactaactttcatgtgaaactatccacacataaatcatt |
28228961 |
T |
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