View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17531_high_1_N (Length: 519)
Name: NF17531_high_1_N
Description: NF17531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17531_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 8187913 - 8188410
Alignment:
| Q |
1 |
caagtttgagttctgaaggtgatggattggatcgtaatgttgtggatagtgggccatctatggatatagatttggaaaagataacggataatgagcaaat |
100 |
Q |
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| T |
8187913 |
caagtttgagttctgaaggtgatggattggatcgtaatgttgtagatagtgggccatctatggatatagatttggaaaagataacggataatgagcaaat |
8188012 |
T |
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| Q |
101 |
ctgtagtgcagtagattctgaacatggcgaggaggaagttgttttagaagcggcaggtatgatatctcaattggagattgataaggagaagaagaatgac |
200 |
Q |
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| T |
8188013 |
ctgtagtgcagtagattctgaacatggcgaggaggaaattgttttagaagcggcaggtatgatatctcaattggagattgataaggagaagaagaatgac |
8188112 |
T |
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| Q |
201 |
ttgattagtggtactagtgatggttttaggatagaagacataagcaacacaacgaaaccccgaagcccagtgatagacatagatactgaggatgctattt |
300 |
Q |
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| T |
8188113 |
ttgattagtggtactagtgatggttttaggatagaagacataagcaacacaacgaaaccccgaagcccagtgatagacatagatactgaggatgctattt |
8188212 |
T |
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| Q |
301 |
gtatgcgtactagagctcgttattcgcttgaaggtttcagtcttgatgagcttgagacctttcttcaagagaccgatgatgaagatgatgttcaaaatgt |
400 |
Q |
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| T |
8188213 |
gtatgcgtactagagctcgttattcgcttgaaggtttcagtcttgatgagcttgagacctttcttcaagagactgatgatgaagatgatgttcaaaatgt |
8188312 |
T |
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| Q |
401 |
cgatgatgaagaagagtataaaaaatttctagcagctgtattacagggtggagaacgtgacggtctttcatctcatgaaaatgaaaaccttgatgatg |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8188313 |
cgatgatgaagaagagtataaaaaatttctagcagctgtattacagggtggagaacgtgacggtctttcatctcatgaaaatgaaaaccttgatgatg |
8188410 |
T |
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