View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17531_high_5 (Length: 424)
Name: NF17531_high_5
Description: NF17531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17531_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 32164502 - 32164925
Alignment:
| Q |
1 |
atactacacatgtcaatgtggcagtttgatcatatctacttttttcatgatcgtgtgtgatcataaagaaaaattaccttcttaacaagcagctggactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32164502 |
atactacacatgtcaatgtggcagtttgatcatatctactttgctcatgatcgtgtgtgatcataaagaaaaattaccttcttaacaagcagctggactg |
32164601 |
T |
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| Q |
101 |
gttttataatcaccctaccgcagatgtgcatgttctgaaattgagtcttgtaaagctggagataaccgttcaggcataagaatcgaagagcttggcagga |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
32164602 |
gttttataatcaccctaccggagatgtgcatgttctgaaaatgagtcttgtaaagctggagataaccgttcaggcataagattcgaagagcttggcagaa |
32164701 |
T |
|
| Q |
201 |
gctgatgggtccgaggaggtaaagtgaccaaaagatcagcagagttagtaaatggccttgtggtagaagcaagattgtctagctcgagagtcaataataa |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32164702 |
gctgatgggttcgaggaggtaaagtgaccaaaagatcagcagagttagtaaatggccttgtagtagaagcaagattgtctagctcgagagtcaataataa |
32164801 |
T |
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| Q |
301 |
ctcattgagctttcatatactcgacttgaagacttgactctaagagtttacttaatataaagaaacgtattaatgatggactcgtaagagaacagtggca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32164802 |
ctcattgagctttcatatactcgacttgaagacttgactctaagagtttacttaatataaagaaacgtattaatgatggactcgtaagagaacagtggca |
32164901 |
T |
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| Q |
401 |
acatggacatattctgtgttaggg |
424 |
Q |
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||||||||||| |||||||||||| |
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| T |
32164902 |
acatggacataatctgtgttaggg |
32164925 |
T |
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