View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17531_high_6 (Length: 401)

Name: NF17531_high_6
Description: NF17531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17531_high_6
NF17531_high_6
[»] chr4 (2 HSPs)
chr4 (21-380)||(16988055-16988414)
chr4 (122-217)||(35088802-35088897)
[»] chr2 (3 HSPs)
chr2 (21-380)||(21807540-21807899)
chr2 (69-366)||(20971202-20971497)
chr2 (126-216)||(23682248-23682338)
[»] chr5 (4 HSPs)
chr5 (69-364)||(26465292-26465587)
chr5 (128-324)||(23884074-23884270)
chr5 (60-211)||(23958779-23958930)
chr5 (285-321)||(23958669-23958705)
[»] chr6 (5 HSPs)
chr6 (29-365)||(34068262-34068598)
chr6 (107-232)||(20850027-20850152)
chr6 (110-234)||(14617738-14617862)
chr6 (162-240)||(28561533-28561611)
chr6 (60-301)||(12302377-12302618)
[»] chr7 (5 HSPs)
chr7 (126-226)||(3004921-3005021)
chr7 (135-244)||(8853841-8853950)
chr7 (168-217)||(18477565-18477614)
chr7 (170-234)||(19666209-19666273)
chr7 (132-226)||(19813298-19813392)
[»] chr1 (2 HSPs)
chr1 (126-226)||(37737401-37737501)
chr1 (120-223)||(13427891-13427994)
[»] scaffold0257 (1 HSPs)
scaffold0257 (81-234)||(8273-8426)
[»] chr8 (2 HSPs)
chr8 (132-304)||(18551164-18551336)
chr8 (123-181)||(2998101-2998159)
[»] chr3 (3 HSPs)
chr3 (168-277)||(44667108-44667217)
chr3 (75-298)||(18963220-18963443)
chr3 (21-73)||(4643364-4643416)


Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 21 - 380
Target Start/End: Complemental strand, 16988414 - 16988055
Alignment:
Q  21 acatcatcataaggagaactagaatcagtgtgtaattttcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaa 120  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16988414 acatcatcataaggagaactagaatcagtgtgtaatttgcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcctgtatcagttaaaa 16988315  T
Q  121 gatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatctt 220  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988314 gatcaagacaatactttctttgacaaagagagattccttgtgaggaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatctt 16988215  T
Q  221 aaaagaagaatgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaa 320  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16988214 aaaagaagaatgcataatggctttaatatcttgaaattcagagatagaatttccagctaggatcacatcatcaacatacacaagtaaaactgtgaatgaa 16988115  T
Q  321 gaagcagtcttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988114 gaagcagtcttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 16988055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 35088897 - 35088802
Alignment:
Q  122 atcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgat 217  Q
    |||||| ||||||||||||||||| ||||| || |||  |   |||||||||||||| | |||||| |||||||| |  || ||||||||||||||    
T  35088897 atcaaggcaatactttctttgacagagagaaatgcctgctttggaatgagcaacctcaataccaaggaagtatttgagttgaccaagatccttgat 35088802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 21 - 380
Target Start/End: Original strand, 21807540 - 21807899
Alignment:
Q  21 acatcatcataaggagaactagaatcagtgtgtaattttcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaa 120  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||    
T  21807540 acatcatcataaggagaactagaatcagtgtgtaatttgcaggaagggtcagatggcgtagaaataggtttggaagctaaaaatcatgtattagttaaaa 21807639  T
Q  121 gatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatctt 220  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21807640 gatcaagacaatactttctttgacaaagagagattccttgtgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatctt 21807739  T
Q  221 aaaagaagaatgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaa 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  21807740 aaaagaagaatgcagaatggctttaatatcttggaattcagagatagaatttccagctaggatcacatcatcaacatacacaagtaaaattgtgaatgaa 21807839  T
Q  321 gaagcagtcttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21807840 gaagcagtcttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 21807899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 69 - 366
Target Start/End: Original strand, 20971202 - 20971497
Alignment:
Q  69 tcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaat 168  Q
    ||||||||||||||| ||||||| ||||| | ||| | |||||||||  |  | |||||||| || |||||||| ||||||||||| |  | ||| ||||    
T  20971202 tcagatggtgtagaatcaggttttgaagcaagaaaacatgtatcagtcta--ggtcaagacattattttctttggcaaagagagatgcactgtgatgaat 20971299  T
Q  169 gagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagataga 268  Q
     ||||||||||| ||||||||| ||||| || || |||||| |||| ||||| || |||||||||||| ||  ||| || || || || ||||| |  ||    
T  20971300 aagcaacctctagaccaagaaaatatttcaattgaccaagagccttaatcttgaaggaagaatgcagattgattttgatgtcctgaaactcagaaagtga 20971399  T
Q  269 atttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtcttcttgatgaagagagagtgatcagaagcagattgaa 366  Q
    | | ||  | |  ||||||||||||||||| ||||| ||  |||||||||||| | | |||||||| |||||||||||||||||||| ||||||||||    
T  20971400 agtaccaacaataatcacatcatcaacataaacaagcaaggctgtgaatgaagtatctgtcttcttaatgaagagagagtgatcagatgcagattgaa 20971497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 23682338 - 23682248
Alignment:
Q  126 agacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttga 216  Q
    |||||||||||||||||||| |  || || |||| |  |||||||||||||||||||||||| || |||||||| ||||||||||| ||||    
T  23682338 agacaatactttctttgacacaatgaaataccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttga 23682248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 69 - 364
Target Start/End: Original strand, 26465292 - 26465587
Alignment:
Q  69 tcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaat 168  Q
    ||||||||||||||| ||||||| | ||| | ||||| | |||||||||  |||||||||||||| |||||||| ||||||||||| |||| ||| ||||    
T  26465292 tcagatggtgtagaagcaggttttgcagcaagaaatcctatatcagttaggagatcaagacaatattttctttggcaaagagagatgccttgtgaggaat 26465391  T
Q  169 gagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagataga 268  Q
    ||||||| |||||||||||||||||||| || |||||||||||||| || |  |||| |||||||||||||||||| || ||||||||||||||||  ||    
T  26465392 gagcaacttctaaaccaagaaagtatttcaattggccaagatccttaatttctaaagcagaatgcagaatggctttgatgtcttggaattcagagagtga 26465491  T
Q  269 atttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtcttcttgatgaagagagagtgatcagaagcagattg 364  Q
    | | || |  | |||||||||||||||||| ||||| ||| |||||||||||| |   |||||||| ||||| ||||| |||||||| | ||||||    
T  26465492 agtaccagtgatgatcacatcatcaacataaacaagcaaagctgtgaatgaagtatatgtcttcttaatgaaaagagaatgatcagatgtagattg 26465587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 128 - 324
Target Start/End: Original strand, 23884074 - 23884270
Alignment:
Q  128 acaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaa 227  Q
    ||||||||||||||| || || |||||||||| |  ||||||||| |||||||||||||| || |||||||| ||||||||||| ||||| || ||||||    
T  23884074 acaatactttctttggcatagtgagattccttgtttagaatgagctacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaagaa 23884173  T
Q  228 gaatgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaag 324  Q
       || |||||| |||| || |  || |||||| | |  || |||||||| || || | |||||| ||||||||||| |  | ||||||||||||||    
T  23884174 ttgtgaagaatgtctttgatgttctgaaattcataaagtgagtttcctgcaagaatgatatcatccacatacacaagaagtattgtgaatgaagaag 23884270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 211
Target Start/End: Complemental strand, 23958930 - 23958779
Alignment:
Q  60 catgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgaca-aagagagattcct 158  Q
    ||||| || ||| |||||||||||| ||||||||| || |  || | ||| ||||| | ||||||||| ||||| ||||||||||| |||| | || |||    
T  23958930 catgatggatcaaatggtgtagaaagaggtttggatgcaaggaaacatgtgtcagtcagaagatcaaggcaatattttctttgacataagaaa-atccct 23958832  T
Q  159 tttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatc 211  Q
    | |||||| |||||||||||||||||||| |||||||| || |||||||||||    
T  23958831 tgtgaagagtgagcaacctctaaaccaaggaagtatttcaattggccaagatc 23958779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 23958705 - 23958669
Alignment:
Q  285 acatcatcaacatacacaagtaaaactgtgaatgaag 321  Q
    |||||||||||||| || |||||||||||||||||||    
T  23958705 acatcatcaacataaaccagtaaaactgtgaatgaag 23958669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 29 - 365
Target Start/End: Complemental strand, 34068598 - 34068262
Alignment:
Q  29 ataaggagaactagaatcagtgtgtaattttcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaaga 128  Q
    |||||| | |||||||||| | ||||| || || |||||||||||||| || |||||||||||| |||| | ||  |  ||||||||||  | ||||||     
T  34068598 ataaggggcactagaatcattatgtaacttgcaagaagggtcagatggagtggaaacaggtttgcaagccagaagaccagtatcagttagcaaatcaagg 34068499  T
Q  129 caatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaag 228  Q
    ||||| ||||| ||||| ||||| || ||||  |||||||||||||||||||| ||||| |||||||| || || ||||| |||||||| |||||||| |    
T  34068498 caatattttctctgacatagagaaatgccttcagaagaatgagcaacctctaagccaaggaagtatttcaattgaccaaggtccttgattttaaaagagg 34068399  T
Q  229 aatgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagt 328  Q
    |||||| ||||| ||| ||    || | |||||| | ||| |  || || |  ||||||||||| ||||| || ||||| || || ||||||| ||  ||    
T  34068398 aatgcaaaatggatttgatggagtgaagttcagaaagagagtcaccagcaataatcacatcatccacatagactagtaacacagtaaatgaagtagtggt 34068299  T
Q  329 cttcttgatgaagagagagtgatcagaagcagattga 365  Q
    ||||||| |||| | ||| |||||||||| |||||||    
T  34068298 cttcttggtgaacaaagaatgatcagaagtagattga 34068262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 232
Target Start/End: Original strand, 20850027 - 20850152
Alignment:
Q  107 tgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggcca 206  Q
    ||||||||| | ||||||||||||||||||||| || || | | | ||||||| |||||| ||||||| || ||||||||||||||| || ||||| |||    
T  20850027 tgtatcagtgagaagatcaagacaatactttctctggcacaaaaatattccttgtgaagagtgagcaaactttaaaccaagaaagtacttcaactgacca 20850126  T
Q  207 agatccttgatcttaaaagaagaatg 232  Q
    ||||| || || || || ||||||||    
T  20850127 agatctttaattttgaatgaagaatg 20850152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 14617862 - 14617738
Alignment:
Q  110 atcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaaga 209  Q
    |||||| | |||||| |||||||||||||| | | |||| || || ||||  ||||| |||||||||||||||||||| || ||||| || ||||| |      
T  14617862 atcagtgagaagatccagacaatactttctctaaaaaagtgaaatgccttgagaagagtgagcaacctctaaaccaaggaattatttcaattggcccaag 14617763  T
Q  210 tccttgatcttaaaagaagaatgca 234  Q
    ||||| ||||| ||||| |||||||    
T  14617762 tccttaatcttgaaagaggaatgca 14617738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 28561611 - 28561533
Alignment:
Q  162 gaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatgg 240  Q
    |||||||| || |||||||| |||||||| ||||| ||||| |||||||| || ||||| || ||||||||||| ||||    
T  28561611 gaagaatgtgccacctctaatccaagaaaatatttcaactgaccaagatctttaatcttgaaggaagaatgcaggatgg 28561533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 301
Target Start/End: Complemental strand, 12302618 - 12302377
Alignment:
Q  60 catgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattcctt 159  Q
    |||||||| ||||| || |||||||||||||||||||  | |   | |  |||||| | ||||||||  |||||||| |||||| | |  ||||||||||    
T  12302618 catgaaggttcagaaggagtagaaacaggtttggaagtcagatgacctagatcagtgagaagatcaatgcaatacttcctttgatacaaggagattcctt 12302519  T
Q  160 ttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattc 259  Q
    | || ||||| | ||| || |||  | | ||||| |||||||  |||||||| || ||||| || |||||||| || |||||||| |||| ||| |||||    
T  12302518 tagatgaatgtgaaacttcaaaatgatggaagtaatttaactaaccaagatctttaatcttgaaggaagaatgtaggatggctttcatatgttgaaattc 12302419  T
Q  260 agagatagaatttcctgctaggatcacatcatcaacatacac 301  Q
    ||| || ||||  || || | ||||| ||||| |||||||||    
T  12302418 agacatggaatcaccagcaatgatcatatcattaacatacac 12302377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 3005021 - 3004921
Alignment:
Q  126 agacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaag 225  Q
    |||||||||||||||||||| |  |||||||||| |  |||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || ||||    
T  3005021 agacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaag 3004922  T
Q  226 a 226  Q
    |    
T  3004921 a 3004921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 8853950 - 8853841
Alignment:
Q  135 tttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgca 234  Q
    ||||| ||||||||||| |||||||  ||||||||||||| |||||| ||||| || || || || || |||||||||||||| ||||| || || ||||    
T  8853950 tttctctgacaaagagatattccttgagaagaatgagcaatctctaatccaaggaaatacttcaattgaccaagatccttgattttaaaggaggagtgca 8853851  T
Q  235 gaatggcttt 244  Q
    ||||||||||    
T  8853850 gaatggcttt 8853841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 18477614 - 18477565
Alignment:
Q  168 tgagcaacctctaaaccaagaaagtattttaactggccaagatccttgat 217  Q
    |||||||| ||||||||||||||  |||| ||||||||||||||||||||    
T  18477614 tgagcaacttctaaaccaagaaaaaatttcaactggccaagatccttgat 18477565  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 19666273 - 19666209
Alignment:
Q  170 agcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgca 234  Q
    ||||||||||||||||||||| ||||| |||||||| |  ||||| ||||| ||||| |||||||    
T  19666273 agcaacctctaaaccaagaaaatatttcaactggcccaagtccttaatcttgaaagaggaatgca 19666209  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 19813298 - 19813392
Alignment:
Q  132 tactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaaga 226  Q
    ||||||||||| || || || || |||| |  |||||||||||| ||||||||||| ||||||||||| |||| | |||| ||||| || |||||    
T  19813298 tactttctttggcatagggaaatcccttgttcagaatgagcaacttctaaaccaaggaagtattttaattggcaatgatctttgattttgaaaga 19813392  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 37737401 - 37737501
Alignment:
Q  126 agacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaag 225  Q
    |||||||||||||||||||| |  |||||||||| |  |||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || ||||    
T  37737401 agacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaag 37737500  T
Q  226 a 226  Q
    |    
T  37737501 a 37737501  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 13427891 - 13427994
Alignment:
Q  120 agatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatct 219  Q
    |||||||||||||| |||||||| || | |  |||||| ||   ||||| ||| |||||||  |||||||| ||||||| ||||||||||||||||||||    
T  13427891 agatcaagacaatattttctttggcatatactgattccattcttagaataagccacctctatgccaagaaaatattttagctggccaagatccttgatct 13427990  T
Q  220 taaa 223  Q
    ||||    
T  13427991 taaa 13427994  T

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Target: scaffold0257 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 8426 - 8273
Alignment:
Q  81 gaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctcta 180  Q
    ||||| |||||||||||||||   | || |||||| |  ||||| |||||||| ||| | ||||||| ||| || ||||  ||||| |||||||||||||    
T  8426 gaaactggtttggaagctaaatgacctgaatcagtgaggagatccagacaatattttttctgacaaacagatatgccttgagaagagtgagcaacctcta 8327  T
Q  181 aaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgca 234  Q
    |||||||||| ||||| || ||||| |  ||||| ||||| ||||| |||||||    
T  8326 aaccaagaaaatatttcaattggcccaagtccttaatcttgaaagaggaatgca 8273  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 132 - 304
Target Start/End: Original strand, 18551164 - 18551336
Alignment:
Q  132 tactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaat 231  Q
    ||||||||||| || | ||| || |||| |  ||||||||| || ||||||||||| || ||||| |||||||||||||| ||||| || |||||   ||    
T  18551164 tactttctttggcataaagatatcccttgttcagaatgagctacttctaaaccaaggaaatatttcaactggccaagatctttgattttgaaagagttat 18551263  T
Q  232 gcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaag 304  Q
    | ||||||| ||| || | ||  |||||||| |  ||||||||||||||||| | |||||| ||||| |||||    
T  18551264 gaagaatggttttgatgttttcaaattcagaaagtgaatttcctgctaggatgatatcatctacatagacaag 18551336  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 2998159 - 2998101
Alignment:
Q  123 tcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaa 181  Q
    ||||||||||||||||||||| ||| |||||| |||| |   |||||||||||||||||    
T  2998159 tcaagacaatactttctttgagaaatagagatcccttctttggaatgagcaacctctaa 2998101  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 44667108 - 44667217
Alignment:
Q  168 tgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagatag 267  Q
    ||||||||||| | ||||||||| || || ||||| || | ||| |||||||| || |||| ||||||||||| ||| |||| |||||| ||||| | ||    
T  44667108 tgagcaacctcaagaccaagaaaatagttcaactgtcccaaatctttgatcttgaatgaagcatgcagaatggatttgatatgttggaactcagaaagag 44667207  T
Q  268 aatttcctgc 277  Q
    ||||||||||    
T  44667208 aatttcctgc 44667217  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 298
Target Start/End: Original strand, 18963220 - 18963443
Alignment:
Q  75 ggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaa 174  Q
    ||||||||||||||||||||||||| |   | |  |||| | | ||||||||  ||||| || ||||| || | |||||||||||  || ||||| ||||    
T  18963220 ggtgtagaaacaggtttggaagctagatgacctaaatcaataagaagatcaatgcaatatttcctttggcacaaagagattccttgagatgaatgtgcaa 18963319  T
Q  175 cctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagatagaatttcc 274  Q
    | ||||||||||| || ||||| ||||| |||||||| || || || || || |||||||| ||  | || |||| ||| |||||||| ||||  || ||    
T  18963320 cttctaaaccaaggaaatatttcaactgaccaagatctttaattttgaatgacgaatgcaggatatcattgatatgttgaaattcagacatagtgttacc 18963419  T
Q  275 tgctaggatcacatcatcaacata 298  Q
     || |  |||||||||||||||||    
T  18963420 agcaattatcacatcatcaacata 18963443  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 4643364 - 4643416
Alignment:
Q  21 acatcatcataaggagaactagaatcagtgtgtaattttcatgaagggtcaga 73  Q
    |||||||||||||||| |||||||||| |||||| ||| ||||| || |||||    
T  4643364 acatcatcataaggagcactagaatcattgtgtagtttgcatgatggatcaga 4643416  T

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