View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17532_high_13 (Length: 352)

Name: NF17532_high_13
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17532_high_13
NF17532_high_13
[»] chr5 (10 HSPs)
chr5 (10-337)||(19502918-19503245)
chr5 (105-170)||(17077886-17077950)
chr5 (52-170)||(9476991-9477111)
chr5 (52-170)||(1588650-1588770)
chr5 (52-170)||(6218388-6218508)
chr5 (52-170)||(22965391-22965511)
chr5 (54-170)||(11493495-11493613)
chr5 (105-163)||(9785133-9785192)
chr5 (52-170)||(32100148-32100268)
chr5 (52-170)||(18253793-18253913)
[»] chr8 (3 HSPs)
chr8 (105-170)||(32793736-32793801)
chr8 (52-170)||(30155444-30155564)
chr8 (52-170)||(26936432-26936552)
[»] chr7 (3 HSPs)
chr7 (52-170)||(41851418-41851538)
chr7 (52-170)||(37549777-37549897)
chr7 (52-170)||(42883196-42883316)
[»] chr3 (6 HSPs)
chr3 (52-170)||(2552741-2552861)
chr3 (52-170)||(4087737-4087857)
chr3 (52-170)||(39258892-39259012)
chr3 (52-170)||(39151034-39151154)
chr3 (52-170)||(46107047-46107167)
chr3 (67-170)||(8240053-8240158)
[»] chr1 (6 HSPs)
chr1 (52-170)||(23435433-23435553)
chr1 (52-170)||(25989939-25990059)
chr1 (52-170)||(6469761-6469881)
chr1 (52-170)||(15731639-15731758)
chr1 (73-170)||(42927540-42927639)
chr1 (101-170)||(50650279-50650349)
[»] chr4 (2 HSPs)
chr4 (52-170)||(732192-732312)
chr4 (52-170)||(8436299-8436419)
[»] chr2 (2 HSPs)
chr2 (52-170)||(10254737-10254857)
chr2 (52-170)||(36371189-36371309)
[»] chr6 (2 HSPs)
chr6 (52-170)||(32858801-32858921)
chr6 (67-170)||(2355362-2355467)
[»] scaffold0029 (2 HSPs)
scaffold0029 (137-170)||(39634-39667)
scaffold0029 (137-170)||(46830-46863)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 19502918 - 19503245
Alignment:
Q  10 attattctcagggtgtagatgtcataaatatagatccttacatttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaataa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19502918 attattctcagggtgtagatgtcataaatatagatccttacatttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaataa 19503017  T
Q  110 cttctatttacccatgattttattttcaaggaagtggatgggaataaaaggttcccatgtagtgtagatagtataaaattgaagtcattatccatatatt 209  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19503018 cttctatttacccatgattttatttttaaggaagtggatggaaataaaaggttcccatgtagtgtagatagtataaaattgaagtcattatccatatatt 19503117  T
Q  210 cactctcataaataacaaaaataattcacaataatctgacaattattaacacaacacannnnnnnnaaaatacccatgaataagatgcccattattattc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        ||||||||||||||||||||||||||||||||||    
T  19503118 cactctcataaataacaaaaataattcacaataatctgacaattattaacccaacacattttttttaaaatacccatgaataagatgcccattattattc 19503217  T
Q  310 ctataagtgaaattttcaaccatcaatc 337  Q
    ||| ||||||||||||||||||||||||    
T  19503218 ctacaagtgaaattttcaaccatcaatc 19503245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 17077886 - 17077950
Alignment:
Q  105 aataacttctatttacccatgattttattttcaaggaagtggatgggaataaaaggttcccatgta 170  Q
    ||||||||| | |||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  17077886 aataacttccacttacccatgattttattc-caaggaagtggatgggaataaaaggttcccatgta 17077950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 9477111 - 9476991
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||||| ||||||| | |||||||||||||||||  | ||| ||||||| |    
T  9477111 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtggacg 9477012  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  9477011 ggaataaaagattcccatgta 9476991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 1588770 - 1588650
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||||| ||||||| | |||||||||||||||||  | ||| ||||||  |    
T  1588770 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcg 1588671  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  1588670 ggaataaaagattcccatgta 1588650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 6218508 - 6218388
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||||| ||||||| | |||||||||||||||||  | ||| ||||||  |    
T  6218508 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcg 6218409  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  6218408 ggaataaaagattcccatgta 6218388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 22965511 - 22965391
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||||| ||||||| | |||||||||||||||||  | ||| ||||||  |    
T  22965511 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcg 22965412  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  22965411 ggaataaaagattcccatgta 22965391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 11493495 - 11493613
Alignment:
Q  54 tgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaa-aataacttctatttacccatgattttattttc-aaggaagtggatggg 151  Q
    ||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||| ||||||||| | |||||||||||||||||  | ||| ||||||  |||    
T  11493495 tgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcggg 11493594  T
Q  152 aataaaaggttcccatgta 170  Q
    |||||||| ||||||||||    
T  11493595 aataaaagattcccatgta 11493613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 9785192 - 9785133
Alignment:
Q  105 aataacttctatttacccatgattttattttc-aaggaagtggatgggaataaaaggttc 163  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||||||||| ||||    
T  9785192 aataacttccatttacccatgattttattctcaaagaaagtggatgggaataaaaagttc 9785133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 32100268 - 32100148
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||   ||||||  ||||| | ||||||| ||||||| | |||||||||||||||||  | ||| ||||||  |    
T  32100268 tttgttacaaagttaaaaaaataactcccggaaataaaaaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcg 32100169  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  32100168 ggaataaaagattcccatgta 32100148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 18253913 - 18253793
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||   ||||||| ||||  | ||||||| ||||||| | |||||||||||||||||  | ||| ||||||  |    
T  18253913 tttgttacaaagttaaaaaaataactcccggaaataaagaattcataggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcg 18253814  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||| ||||||    
T  18253813 ggaataaaagattctcatgta 18253793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 32793801 - 32793736
Alignment:
Q  105 aataacttctatttacccatgattttattttcaaggaagtggatgggaataaaaggttcccatgta 170  Q
    ||||||||| | ||| ||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  32793801 aataacttccacttatccatacttttattttcaaggaagtggatgggaataaaaggttcccatgta 32793736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 30155444 - 30155564
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaa-aataacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||| ||||||||| | |||||||||||||||||  | ||| ||||||  |    
T  30155444 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcg 30155543  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  30155544 ggaataaaagattcccatgta 30155564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 26936432 - 26936552
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaa-aataacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||| ||||  |||||||| ||||| | ||||| ||||||||| | |||||||||||||||||  | ||| ||||||       
T  26936432 tttgttacaaagttaaaaaaataaatcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggca 26936531  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  26936532 ggaataaaagattcccatgta 26936552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 41851418 - 41851538
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaa-aataacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||| ||||||||| | |||||||||||||||||  | ||| ||||||| |    
T  41851418 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtggacg 41851517  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  41851518 ggaataaaagattcccatgta 41851538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 37549777 - 37549897
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaa-aataacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||| ||||||||| | |||||||||||||||||  | ||| ||||||  |    
T  37549777 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcg 37549876  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  37549877 ggaataaaagattcccatgta 37549897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 42883316 - 42883196
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| |||||||   |||||||| ||||| | ||||||| ||||||| | |||||||||||||||||  | ||| ||||||  |    
T  42883316 tttgttacaaagttaaaaaaataactcctgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcg 42883217  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  42883216 ggaataaaagattcccatgta 42883196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 2552861 - 2552741
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||||| ||||||| | |||||||||||||||||  | ||| ||||||| |    
T  2552861 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtggacg 2552762  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  2552761 ggaataaaagattcccatgta 2552741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 4087857 - 4087737
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||||| ||||||| | |||||||||||||||||  | ||| ||||||| |    
T  4087857 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtggacg 4087758  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  4087757 ggaataaaagattcccatgta 4087737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 39259012 - 39258892
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||||| ||||||| | |||||||||||||||||  | ||| ||||||| |    
T  39259012 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtggacg 39258913  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  39258912 ggaataaaagattcccatgta 39258892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 39151034 - 39151154
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaa-aataacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||| ||||||||| | |||||||||||||||||  | ||| ||||||  |    
T  39151034 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcg 39151133  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  39151134 ggaataaaagattcccatgta 39151154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 46107047 - 46107167
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaa-aataacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||| ||||||||| | |||||||||||||||||  | ||| ||||||  |    
T  46107047 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcg 46107146  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||| ||||||    
T  46107147 ggaataaaagattctcatgta 46107167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 8240053 - 8240158
Alignment:
Q  67 aaaaattaactcccatgaataaagcattcccatgaaaa-aataacttctatttacccatgattttattttc-aaggaagtggatgggaataaaaggttcc 164  Q
    ||||| ||||||||  |||||||| ||||| | ||||| ||||||||| | |||||||||||||||||  | ||| ||||||  ||||||||||| ||||    
T  8240053 aaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcc 8240152  T
Q  165 catgta 170  Q
    ||||||    
T  8240153 catgta 8240158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 23435553 - 23435433
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||||| ||||||| | |||||||||||||||||  | ||| ||||||| |    
T  23435553 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtggacg 23435454  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  23435453 ggaataaaagattcccatgta 23435433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 25989939 - 25990059
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaa-aataacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||| ||||||||| | |||||||||||||||||  | ||| ||||||  |    
T  25989939 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcg 25990038  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  25990039 ggaataaaagattcccatgta 25990059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 6469881 - 6469761
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||| | | ||||||| ||||||| | |||||||||||||||||  | ||| ||||||  |    
T  6469881 tttgttacaaagttaaaaaaataactcccgggaataaagaatttctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcg 6469782  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  6469781 ggaataaaagattcccatgta 6469761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 15731758 - 15731639
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| |||||| || ||||  |||||||| ||||| | ||||||| ||||||| | |||||||||||||||||  | ||| ||||||| |    
T  15731758 tttgttacaaagttaaaaaat-aattcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtggacg 15731660  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  15731659 ggaataaaagattcccatgta 15731639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 42927639 - 42927540
Alignment:
Q  73 taactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatgggaataaaaggttcccatgta 170  Q
    ||||||||  |||||||| ||||| | ||||||| ||||||| | |||||||||||||||||  | ||| ||||||  ||||||||||| ||||||||||    
T  42927639 taactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgta 42927540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 50650279 - 50650349
Alignment:
Q  101 aaaaaataacttctatttacccatgattttattttc-aaggaagtggatgggaataaaaggttcccatgta 170  Q
    ||||||||||||| | |||||||||||||||||  | ||| ||||||| ||||||||||| ||| ||||||    
T  50650279 aaaaaataacttccacttacccatgattttattcccaaagaaagtggacgggaataaaagattctcatgta 50650349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 732192 - 732312
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaa-aataacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||| ||||  |||||||| ||||| | ||||| ||||||||| | |||||||||||||||||  | ||| ||||||| |    
T  732192 tttgttacaaagttaaaaaaataattcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtggacg 732291  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  732292 ggaataaaagattcccatgta 732312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 8436299 - 8436419
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaa-aataacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||| ||||||||| | |||||||||||||||||  | ||| ||||||  |    
T  8436299 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcg 8436398  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| |||| |||||    
T  8436399 ggaataaaagattcctatgta 8436419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 10254737 - 10254857
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaa-aataacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||| ||||||||| | |||||||||||||||||  | ||| ||||||  |    
T  10254737 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcg 10254836  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  10254837 ggaataaaagattcccatgta 10254857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 36371309 - 36371189
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||  |||||||| ||||| | ||||||| ||||||| | |||||||||||||||||  | ||| ||||||  |    
T  36371309 tttgttacaaagttaaaaaaataactcccgggaataaagaattcctaggaaaaaaataacttccacttacccatgattttattcccaaagaaagtgggcg 36371210  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  36371209 ggaataaaagattcccatgta 36371189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 32858921 - 32858801
Alignment:
Q  52 tttgttataaagttcaaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatg 149  Q
    ||||||| |||||| ||||| ||||||||   ||||||| ||||| | ||||||| ||||||| | ||||||||||||||| |  | ||| ||||||  |    
T  32858921 tttgttacaaagttaaaaaaataactcccgaaaataaagaattcctaggaaaaaaataacttccacttacccatgattttactcccaaagaaagtgggcg 32858822  T
Q  150 ggaataaaaggttcccatgta 170  Q
    |||||||||| ||||||||||    
T  32858821 ggaataaaagattcccatgta 32858801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 2355467 - 2355362
Alignment:
Q  67 aaaaattaactcccatgaataaagcattcccatgaaaaaa-taacttctatttacccatgattttattttc-aaggaagtggatgggaataaaaggttcc 164  Q
    ||||| ||||||||  |||||||| ||||| | ||||||| ||| ||| | |||||||||||||||||  | ||| ||||||  ||||||||||| ||||    
T  2355467 aaaaaataactcccgggaataaagaattcctaggaaaaaaataatttccacttacccatgattttattcccaaagaaagtggccgggaataaaagattcc 2355368  T
Q  165 catgta 170  Q
    ||||||    
T  2355367 catgta 2355362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 39634 - 39667
Alignment:
Q  137 aaggaagtggatgggaataaaaggttcccatgta 170  Q
    |||||||||| |||||||||||||||||||||||    
T  39634 aaggaagtgggtgggaataaaaggttcccatgta 39667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 46830 - 46863
Alignment:
Q  137 aaggaagtggatgggaataaaaggttcccatgta 170  Q
    |||||||||| |||||||||||||||||||||||    
T  46830 aaggaagtgggtgggaataaaaggttcccatgta 46863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University