View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17532_high_18 (Length: 299)
Name: NF17532_high_18
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17532_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 65 - 282
Target Start/End: Complemental strand, 41208515 - 41208298
Alignment:
| Q |
65 |
ataccatttatcttctttgagaattcatcccaccaatctacaacaccctctttctcagatgacccagaagcagaaccagaaccgttattattgtcatgtg |
164 |
Q |
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| T |
41208515 |
ataccgttgatcttctttgacaattcatcccaccaatctacaagaccctctttctcagatgacccagaagcagaaccagaaccgttattattgtcatgtg |
41208416 |
T |
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| Q |
165 |
tcttctctgtctttcttttcttcttggttcctctcacaggacccatcacaacaaattaattgaatcaagaattttgaaggggcaacaaagtctacaagaa |
264 |
Q |
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| T |
41208415 |
tcttctctgtctttcttctcttcttggttcctctcacaggacccatcacaacaagttaattgaatcaagaattttgaaggggcaacaaagtctacaagaa |
41208316 |
T |
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| Q |
265 |
agaattcaaagggtcaaa |
282 |
Q |
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| T |
41208315 |
agaattcaaagggtcaaa |
41208298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 29 - 284
Target Start/End: Complemental strand, 41198568 - 41198317
Alignment:
| Q |
29 |
caattatataaattgaatacagtgatgatgaaattcataccatttatcttctttgagaattcatcccaccaatctacaacaccctctttctcagatgacc |
128 |
Q |
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| T |
41198568 |
caattatataaattgaatacagtgatgatgaaattcataccatttatcttctttgagaattcatcccaccaatctacaacaccctctttctcagatgacc |
41198469 |
T |
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| Q |
129 |
cagaagcagaaccagaaccgttattattgtcatgtgtcttctctgtctttcttttcttcttggttcctctcacaggacccatcacaacaaattaattgaa |
228 |
Q |
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| T |
41198468 |
cagaagcagaatca------ttattattgtcataactcttctctgtctttcttctctttttgattcctctcacaggacccatcacaacaagttaattgaa |
41198375 |
T |
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| Q |
229 |
tcaagaattttgaaggggcaa--caaagtctacaagaaagaattcaaagggtcaaaga |
284 |
Q |
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| T |
41198374 |
tcagaaattttgaagggtcaaatcaaagtctgcaagaaagaattcaaagggtcaaaga |
41198317 |
T |
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