View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17532_high_3 (Length: 615)
Name: NF17532_high_3
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17532_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 17 - 601
Target Start/End: Original strand, 44542688 - 44543266
Alignment:
| Q |
17 |
aagatacacatttaccaatcaactatgtgtgatatgtgtatattaattaattgttatatcatacgatgtggcatcctcctcaagttgggatgttgaattt |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44542688 |
aagatacacatttactaatcaactatgtgtgatatgtgtatattaattaattgttatatcatacgatgtggcatcctcctcaagttgggatgttgaattt |
44542787 |
T |
|
| Q |
117 |
tgaagagagtctttatcgtgagccaataataattgttggtggtgagactgaggatggatgatgggttttttcttatgttgtttgcttccaaaagaagtca |
216 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44542788 |
tgaagagagtgtttatcgtcagccaataataattgttggtggtgag------gatggatgatgggttttttcttatgttgtttgcttccaaaagaagtca |
44542881 |
T |
|
| Q |
217 |
cagccatgaaacctgcaatggccaatgctccaccgaacacaagaagtcccgtaattccaccttcaccaccaataattatacttcctaaagaagtgtgtat |
316 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44542882 |
cagccatgaaacctgcaatagccaatgctccaccgaacacaagaagtcccgtaattccaccttcaccaccaatagttatacttcctaaagaagtgtgtat |
44542981 |
T |
|
| Q |
317 |
tttcttctttccatgtttgtttgttgtcttttcatcctccatcatcctttgtcaattgaagcaaagccaagagatgaagtttatttattatcttacaaat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44542982 |
tttcttctttccatgtttgtttgttgtcttttcatcctccatcatcctttgtcaattgaagcaaagccaagagatgaagtttatttattatcttacaaat |
44543081 |
T |
|
| Q |
417 |
ataatagaaggagtgatatcatgcatgcagagtgagacagaatcgggcttcttcgttttgttcggattcatcacttggaaccttcaccagcttcccacat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44543082 |
ataatagaaggagtgatatcatgcatgcagagtgagacagaatcgggcttcttcgttttgttcggattcatcacttggaaccttcaccagcttcccacat |
44543181 |
T |
|
| Q |
517 |
gttaagaatgggagacacgtgtttgaatattgcccatcatttgttcttgttaactcaccgcaattttagttcaagcaaaatactt |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44543182 |
gttaagaatgggagacacgtgtttgaatattgcccatgatttgttcttgttaactcaccgcaattttagttcaagcaaaatactt |
44543266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University