View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17532_high_5 (Length: 491)
Name: NF17532_high_5
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17532_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 473
Target Start/End: Original strand, 7115679 - 7116148
Alignment:
| Q |
12 |
atgaacattgaatacatgaaatattttgtgtgagaagaaaacttgggcacattgttttctagtctgtgggctacatgaaatatttttcatgcctagaata |
111 |
Q |
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| T |
7115679 |
atgaacactgaatagaagaaaaattttgtgtgagaagaaaacttgggcacattgttttctagtctgtgggctacatgaaatatttttcatgcctagaata |
7115778 |
T |
|
| Q |
112 |
ttcaattaattatcacatacnnnnnnnnn-agaaaattttagcatttaattatcacatactatacttctacttcatcggagtaaagaggatcagcgttaa |
210 |
Q |
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| T |
7115779 |
ttcaattaattatcacatactttttttttgagcaaaatttagcatttaattatcacatactatacttctacttcatcggagtaaagaggatcagtgttaa |
7115878 |
T |
|
| Q |
211 |
ttatttaaagtgggacctattccgttcattacgcatgaaaaaatcaacgagggataagaccnnnnnnnnnnnnnnnntagtagcacaccccaccaatact |
310 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7115879 |
ttatttaaagtgggacctattccgttcattacacatgaaaaaatcaacgagggataagaccaaaagaaaaaagaaaatagtagcacaccccaccaatact |
7115978 |
T |
|
| Q |
311 |
atataaaatataataagactaa-------gagcactacgttgtgatctatgcatttagaaattgcattgtagttttgatagttaatttgattctatacat |
403 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7115979 |
atataaaatataataagactaaggtctaagagcactacgttgtgatctatgcatttagaaattgcattgtagttttgatagttaatttgattctatacag |
7116078 |
T |
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| Q |
404 |
aaaaatttaagcaacaataatgggttctcttatggcaggatggggctcttcttccattgatcctaaatca |
473 |
Q |
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| T |
7116079 |
aaaaatttaagcaacgataatgggttctcttatggcaggatggggctcttcttccattgatcctaaatca |
7116148 |
T |
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