View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17532_high_6 (Length: 476)
Name: NF17532_high_6
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17532_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 11 - 459
Target Start/End: Original strand, 47368607 - 47369067
Alignment:
| Q |
11 |
cagagaataatgtagttgtgagtgtgtctataaaataataaaagtagtattgcatcaatatacatcatttttcggtgtttacagtatcaagaaatggtat |
110 |
Q |
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| T |
47368607 |
cagagaatagtgtagttgtgagtgtgtctataaaataataaaagtagtattgcatcaatatacatcatttttcggtgtttacagtatcaagaaatggtat |
47368706 |
T |
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| Q |
111 |
tatggaacctcatttacagagnnnnnnngtgttaatttcttaacttttttggtttatactttacaggcattccttttctgcttataaattttcctccatg |
210 |
Q |
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| T |
47368707 |
tatggaacctcatttacagagaaaaaaagtgttaatttcttaacttttttggtttatactttacaggcattccttttctgcttataaattttcctccatg |
47368806 |
T |
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| Q |
211 |
tttccaaatagttgggtgtatcctctaaatagtttatagatttaatttgtatacacaatcattgaaatcttattgtatacatgcatccaatcaaatcacg |
310 |
Q |
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| T |
47368807 |
tttccaaatagttgggtgtatcctctaaatagtttatagatttaatttgtatacacaatcattctaatcttattgtatacatgcatccaatcaaatcacg |
47368906 |
T |
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| Q |
311 |
tt------------atgtagatattttagaaactaacttaaaaaagcgacactatgatgtgatttgatgtatgtgacataaagattaataacgtaattta |
398 |
Q |
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| T |
47368907 |
ttatgtagatataaatgtagatattttagaaactaacttaaaaaagcgacactatgatgtgatttgatgtatgtgacataaagattaataacgtaattta |
47369006 |
T |
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| Q |
399 |
caacagataagcaactttagtgtcttggtgacattgagttggagaccacataactccaaat |
459 |
Q |
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| T |
47369007 |
caacagataagcaacttcagtgtcttggtgacattgagttggagaccacataactccaaat |
47369067 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 8132261 - 8132208
Alignment:
| Q |
312 |
tatgtagatattttagaaactaacttaaaaaagcgacactatgatgtgatttgat |
366 |
Q |
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| T |
8132261 |
tatggagatattttagaaactaacttataaaagtg-cactatgatgtgatttgat |
8132208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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