View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17532_low_11 (Length: 443)

Name: NF17532_low_11
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17532_low_11
NF17532_low_11
[»] chr7 (10 HSPs)
chr7 (27-420)||(48089170-48089580)
chr7 (26-283)||(33002993-33003271)
chr7 (242-344)||(8405313-8405415)
chr7 (278-422)||(10703132-10703277)
chr7 (187-421)||(24657903-24658148)
chr7 (278-422)||(10702665-10702811)
chr7 (359-427)||(1691534-1691602)
chr7 (26-96)||(1692119-1692189)
chr7 (307-350)||(33003264-33003307)
chr7 (363-422)||(33941750-33941810)
[»] chr8 (6 HSPs)
chr8 (187-430)||(18075718-18075962)
chr8 (26-171)||(18076005-18076151)
chr8 (363-429)||(11995260-11995326)
chr8 (367-422)||(34697088-34697143)
chr8 (363-422)||(7681486-7681545)
chr8 (363-422)||(44873209-44873268)
[»] chr2 (6 HSPs)
chr2 (187-424)||(40372655-40372892)
chr2 (187-427)||(2081599-2081835)
chr2 (268-420)||(6141389-6141542)
chr2 (278-422)||(18458704-18458852)
chr2 (52-171)||(40372931-40373050)
chr2 (365-415)||(34189947-34189997)
[»] chr4 (7 HSPs)
chr4 (267-422)||(2185135-2185290)
chr4 (259-343)||(2201210-2201294)
chr4 (363-422)||(36247751-36247810)
chr4 (363-420)||(4377162-4377219)
chr4 (288-339)||(54054455-54054506)
chr4 (375-422)||(54054716-54054763)
chr4 (366-422)||(33517953-33518009)
[»] chr3 (9 HSPs)
chr3 (267-419)||(8034690-8034838)
chr3 (267-422)||(7728915-7729072)
chr3 (364-424)||(38572544-38572604)
chr3 (363-421)||(24309801-24309859)
chr3 (363-423)||(52309320-52309377)
chr3 (387-424)||(11640613-11640650)
chr3 (307-344)||(30201521-30201558)
chr3 (26-82)||(7728627-7728683)
chr3 (363-399)||(23084443-23084479)
[»] chr1 (5 HSPs)
chr1 (217-295)||(36420536-36420614)
chr1 (267-343)||(42311479-42311555)
chr1 (363-415)||(39299273-39299325)
chr1 (382-421)||(41006125-41006164)
chr1 (380-422)||(36420500-36420542)
[»] chr5 (3 HSPs)
chr5 (363-421)||(7607393-7607451)
chr5 (365-424)||(26459614-26459673)
chr5 (363-424)||(36744858-36744920)
[»] chr6 (3 HSPs)
chr6 (363-424)||(33704025-33704086)
chr6 (363-424)||(35187961-35188022)
chr6 (364-423)||(21883171-21883230)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 27 - 420
Target Start/End: Complemental strand, 48089580 - 48089170
Alignment:
Q  27 ataattaataaaacacaaaatcagtaactcagtaaataactctgtctttttcccttttccctgagtcccgcgcacctcttgccctcttcttatcctctct 126  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||  | |||||||||||||||||||||||||||||    
T  48089580 ataattaataaaacacaaaatcagtaactcagtaaataactatgtccttttccctttcccctgagtcatgtgcacctcttgccctcttcttatcctctct 48089481  T
Q  127 ctcaactttcaatctcatccccttagttttggtgtgcagctgcttctattgtcactttag------------------tgcatagtgtttatttttatga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||    
T  48089480 ctcaactttcaatctcatccccttagttttggtgtgcagctgcttctattgtcactttagcggtaagtatttttggtgtgcatagtgtttatttttatga 48089381  T
Q  209 aattgctaagtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaagagcacactactgtattttagactatttgatccgtgagttttt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  48089380 aattgctaagtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaagagcacactactgtattttagactatttgatcc-cgagttttt 48089282  T
Q  309 gtgtttcttacacaatctcaacgagaataatatttgttgattnnnnnnnncatttagtttgtattattatttatttgaaattttaactccacatgtacct 408  Q
    |||||||||||||||||||||| |||||||||||||||||||        ||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  48089281 gtgtttcttacacaatctcaacaagaataatatttgttgattaaaaaaaacatttagtttgcattattatttatttgaaattttaactccacatgtactt 48089182  T
Q  409 aaagtctggatc 420  Q
    ||| ||||||||    
T  48089181 aaaatctggatc 48089170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 283
Target Start/End: Original strand, 33002993 - 33003271
Alignment:
Q  26 tataattaataaaacacaaaatcagtaactcagtaaataactctgtctttttcccttttccctgagtcccgcgcacctcttgccctcttcttatcctctc 125  Q
    ||||||| |||||||||||||  ||| ||||||||||||||||| || |||||||||| || ||||||  |||  |||||||||||| ||| ||||||||    
T  33002993 tataattgataaaacacaaaagaagtgactcagtaaataactctctccttttccctttcccttgagtcatgcgtgcctcttgccctcctctcatcctctc 33003092  T
Q  126 tctcaactttcaatctcatccccttag-ttttggtgtgcagctgcttctat------tgtcactttag--------------tgcatagtgtttattttt 204  Q
    |||||||||||||||||||| |||||| ||||||||||  | |||||||||      ||| |||||||              ||||| ||||||||||||    
T  33003093 tctcaactttcaatctcatctccttagtttttggtgtgatgttgcttctatgtggtatgttactttagcagtaagcattttttgcatggtgtttattttt 33003192  T
Q  205 atgaaattgctaagtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaagagcacactactgtattt 283  Q
    ||| ||||||  ||||||  ||||||||||||||| | |||||||||| | ||||||||||||| |||||| |||||||    
T  33003193 atggaattgccgagtattgagttggcaggtgcttgcttttttgcttttgggacctttgtaagaggacactattgtattt 33003271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 242 - 344
Target Start/End: Original strand, 8405313 - 8405415
Alignment:
Q  242 cttttgcttttagcacctttgtaagagcacactactgtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatat 341  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| |||| ||||||| || ||||||||||    
T  8405313 cttttgcttttggcatctttgtaagagcacactactgtgttttagactttttgatccgcgagtttttgtgtttattacccaatctcgacaagaataatat 8405412  T
Q  342 ttg 344  Q
    |||    
T  8405413 ttg 8405415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 278 - 422
Target Start/End: Original strand, 10703132 - 10703277
Alignment:
Q  278 gtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgattnnnnnnnn-catttagtttgtattatt 376  Q
    |||| |||| |||||||||  | |||||||||||||||||| ||||||||  |||||||||||||||| ||||         ||||||||||| ||||||    
T  10703132 gtatgttaggctatttgatatgcgagtttttgtgtttcttatacaatctcgtcgagaataatatttgtcgattaaaaaaattcatttagtttgcattatt 10703231  T
Q  377 atttatttgaaattttaactccacatgtacctaaagtctggatccg 422  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||    
T  10703232 atttatttgacattttaactccacatatacctaaagtctggatccg 10703277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 187 - 421
Target Start/End: Complemental strand, 24658148 - 24657903
Alignment:
Q  187 tgcatagtgtttatttttatgaaattgctaagtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaa-------gagcacactactgt 279  Q
    |||||| |||||||||||||  ||||| | |||||| |||||||| ||| ||| |||||||||||| ||||||||||||       ||||||||||||||    
T  24658148 tgcataatgtttatttttatagaattgttgagtattgggttggcatgtgtttgctcttttgcttttggcacctttgtaacttgtaagagcacactactgt 24658049  T
Q  280 --attttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgatt--nnnnnnnncatttagtttgtattat 375  Q
      |||||| ||||||||||||| |||||||| |||||||||||||||||  | |||||||| |||| | ||||           |  ||||||| |||||    
T  24658048 gtattttaaactatttgatccgcgagtttttatgtttcttacacaatcttgatgagaataaaatttatcgattaaaaaaaataaaaatagtttgcattat 24657949  T
Q  376 tatttatttgaaattttaactccacatgtacctaaagtctggatcc 421  Q
    ||||||||| ||||||||||||||||| || ||||| |||||||||    
T  24657948 tatttatttaaaattttaactccacatatatctaaaatctggatcc 24657903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 10702811 - 10702665
Alignment:
Q  278 gtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgattnnnnnnnn--catttagtttgtattat 375  Q
    |||| ||||||||||||||  |  |||||||||||||||||||||||||| |||||||||||| || | ||||          ||||||||||| |||||    
T  10702811 gtatgttagactatttgatatgcaagtttttgtgtttcttacacaatctcgacgagaataataattctcgattaaaaaaaaatcatttagtttgcattat 10702712  T
Q  376 tatttatttgaaattttaactccacatgtacctaaagtctggatccg 422  Q
    ||||||||||| |||||| |||||||| ||||||||||| |||||||    
T  10702711 tatttatttgacattttagctccacatatacctaaagtcaggatccg 10702665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 1691602 - 1691534
Alignment:
Q  359 catttagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgtctct 427  Q
    ||||||||||  ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||    
T  1691602 catttagttttcattattatttatttgaaattttagctccacatatacctaaagtctcgatccgtctct 1691534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 1692189 - 1692119
Alignment:
Q  26 tataattaataaaacacaaaatcagtaactcagtaaataactctgtctttttcccttttccctgagtcccg 96  Q
    ||||||| |||||||||||||  ||| |||| |||||||||||| ||||||||||||| |||||| |||||    
T  1692189 tataattgataaaacacaaaagaagtgactcggtaaataactctctctttttccctttcccctgaatcccg 1692119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 33003264 - 33003307
Alignment:
Q  307 ttgtgtttcttacacaatctcaacgagaataatatttgttgatt 350  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||    
T  33003264 ttgtatttcttacacaatctcgacgagaacaatatttgttgatt 33003307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 33941750 - 33941810
Alignment:
Q  363 tagtttgtattattatttatttgaaattttaa-ctccacatgtacctaaagtctggatccg 422  Q
    |||||||||||||| ||| ||| || |||| | |||||||| |||||||||||||||||||    
T  33941750 tagtttgtattattgtttttttaaattttttagctccacatatacctaaagtctggatccg 33941810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 187 - 430
Target Start/End: Complemental strand, 18075962 - 18075718
Alignment:
Q  187 tgcatagtgtttatttttatgaaattgctaagtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaagagcacactactgtattttag 286  Q
    ||||||||||||||||||||| ||||| | |||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  18075962 tgcatagtgtttatttttatggaattgttgagtattgggttggcaggtgcttgctcttttgcttttagcacctttgtatgagcacactactgtattttag 18075863  T
Q  287 actatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttga-ttnnnnnnnncatttagtttgtattattatttatttg 385  Q
    ||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| |         ||||||||||| |||||||||||||||    
T  18075862 actatttgatccgcgagtttttgtgtttcttacacaatcttgacgagaataatatttgttgactaaaaaaaaacatttagtttgcattattatttatttg 18075763  T
Q  386 aaattttaactccacatgtacctaaagtctggatccgtctctgct 430  Q
    ||||||||  |||||||||||||||||| || ||| ||| |||||    
T  18075762 aaattttagttccacatgtacctaaagtatgtatctgtccctgct 18075718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 18076151 - 18076005
Alignment:
Q  26 tataattaataaaacacaaaatcagtaactcagtaaataactctgtcttttt-cccttttccctgagtcccgcgcacctcttgccctcttcttatcctct 124  Q
    ||||||| |||||||||||||  |||||||| |||||||||||| ||||||| |||||||||| |||||| |||| |||||||||||||| | |||||||    
T  18076151 tataattgataaaacacaaaagaagtaactcggtaaataactctctcttttttcccttttcccggagtcctgcgcgcctcttgccctcttgtcatcctct 18076052  T
Q  125 ctctcaactttcaatctcatccccttagttttggtgtgcagctgctt 171  Q
    |||||||||||||||||| |||||||||||||| ||||| |||||||    
T  18076051 ctctcaactttcaatctcgtccccttagttttgatgtgctgctgctt 18076005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 363 - 429
Target Start/End: Original strand, 11995260 - 11995326
Alignment:
Q  363 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgtctctgc 429  Q
    |||||||||||||||||||||| |||||||| |||||||| |||||||||| |||||||||||||||    
T  11995260 tagtttgtattattatttatttaaaattttagctccacatatacctaaagtttggatccgtctctgc 11995326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 34697088 - 34697143
Alignment:
Q  367 ttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccg 422  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  34697088 ttgtactattatttatttaaaattttagctccacatgtacctaaagtctggatccg 34697143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 7681486 - 7681545
Alignment:
Q  363 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccg 422  Q
    |||||||||||||||||| ||||||||||||||  ||||| |||| || |||| ||||||    
T  7681486 tagtttgtattattatttctttgaaattttaaccacacatataccaaatgtctagatccg 7681545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 44873268 - 44873209
Alignment:
Q  363 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccg 422  Q
    ||||||| |||||| ||| ||| |||||||| |||| ||||||||||||||||| |||||    
T  44873268 tagtttgcattattgtttctttaaaattttagctccgcatgtacctaaagtctgaatccg 44873209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 6e-72; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 187 - 424
Target Start/End: Complemental strand, 40372892 - 40372655
Alignment:
Q  187 tgcatagtgtttatttttatgaaattgctaagtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaagagcacactactgtattttag 286  Q
    ||||||||||||||||||||| ||||||| ||||||  ||||||||||| ||| |||||||||||| |||||||||||||||||||||| | ||||||||    
T  40372892 tgcatagtgtttatttttatggaattgctgagtattgagttggcaggtgtttgctcttttgctttttgcacctttgtaagagcacactagtatattttag 40372793  T
Q  287 actatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgattnnnnnnnncatttagtttgtattattatttatttga 386  Q
    ||||||||||| |||||||||||| |||||||||||||||| |||||||| |||||||||||||         |||||||| | ||||||||||||||||    
T  40372792 actatttgatctgtgagtttttgtttttcttacacaatctcgacgagaatgatatttgttgattaaaaaaaatatttagttcgcattattatttatttga 40372693  T
Q  387 aattttaactccacatgtacctaaagtctggatccgtc 424  Q
    ||| ||| ||||||||| ||||||||||||||||||||    
T  40372692 aatcttagctccacatggacctaaagtctggatccgtc 40372655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 187 - 427
Target Start/End: Original strand, 2081599 - 2081835
Alignment:
Q  187 tgcatagtgtttatttttatgaaattgctaagtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaagagcacactactgtattttag 286  Q
    ||||||||||||||||||||| ||||||  |||||| |||||||||||||||| |||||||||||| |||||| |||||||||||||||| |||||||||    
T  2081599 tgcatagtgtttatttttatggaattgccgagtattgggttggcaggtgcttgctcttttgcttttggcacctctgtaagagcacactaccgtattttag 2081698  T
Q  287 actatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgattnnnnnnnncatttagtttgtattattatttatttga 386  Q
    ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||| ||||         |  ||||||| ||||| ||||||||||    
T  2081699 actatttgatccgcgagtttttgtgtttcttagacaatctcgacgagaataatatttgtcgattaaata----aagtagtttgcattatcatttatttga 2081794  T
Q  387 aattttaactccacatgtacctaaagtctggatccgtctct 427  Q
    ||||||| ||||||||||||||||||| | |||||| ||||    
T  2081795 aattttagctccacatgtacctaaagtttagatccgcctct 2081835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 268 - 420
Target Start/End: Complemental strand, 6141542 - 6141389
Alignment:
Q  268 gcacactactgtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgatt-nnnnnnnncatttagt 366  Q
    |||||||| ||||| || |||||||||||  | ||||||||||||||||||||||||||| ||||||||||||||||| ||||          |||| ||    
T  6141542 gcacactagtgtatgttcgactatttgatttgcgagtttttgtgtttcttacacaatctcgacgagaataatatttgtcgattaaaaaaatagatttggt 6141443  T
Q  367 ttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatc 420  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6141442 ttgcattattatttatttgaaattttagctccacatgtacctaaagtctggatc 6141389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 18458852 - 18458704
Alignment:
Q  278 gtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgatt----nnnnnnnncatttagtttgtatt 373  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||  |||            || |||||||| |||    
T  18458852 gtatgttagactatttgatctgtgagtttttgtgtttcttacacaatctcgacgagaataatatttgtaaattaaaaaaaaaattcacttagtttgcatt 18458753  T
Q  374 attatttatttgaaattttaactccacatgtacctaaagtctggatccg 422  Q
    ||||||||||||| |||||| |||||||| ||||||||| |||||||||    
T  18458752 attatttatttgacattttagctccacatatacctaaagcctggatccg 18458704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 40373050 - 40372931
Alignment:
Q  52 aactcagtaaataactctgtctttttcccttttccctgagtcccgcgcacctcttgccctcttcttatcctctctctcaactttcaatctcatcccctta 151  Q
    |||||||||||||||||| |  ||||||||||  ||||||||  ||||  |||||| |||||||| |||||| |||||||||||||||||||||||||||    
T  40373050 aactcagtaaataactctcttcttttccctttctcctgagtcttgcgcgtctcttgtcctcttctcatcctcactctcaactttcaatctcatcccctta 40372951  T
Q  152 gttttggtgtgcagctgctt 171  Q
    |||||||||||  |||||||    
T  40372950 gttttggtgtgttgctgctt 40372931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 415
Target Start/End: Complemental strand, 34189997 - 34189947
Alignment:
Q  365 gtttgtattattatttatttgaaattttaactccacatgtacctaaagtct 415  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  34189997 gtttgtattattatttatttaaaattttaactccacatatacctaaagtct 34189947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 267 - 422
Target Start/End: Complemental strand, 2185290 - 2185135
Alignment:
Q  267 agcacactactgtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgattnnnnnnnncatttagt 366  Q
    ||||||||||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| ||||        ||||||||    
T  2185290 agcacactactatatgttagactatttgatctgcgagtttttgtgtttcttacacaatctcaacaagaataatatttgtcgattaaaaaaaacatttagt 2185191  T
Q  367 ttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccg 422  Q
    |||  |||||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  2185190 ttgagttattatttatttgaaattttagctccacatatacctaaagtttggatccg 2185135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 2201210 - 2201294
Alignment:
Q  259 tttgtaagagcacactactgtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatattt 343  Q
    ||||||||||||| ||||||||||||||||||||||||| |  | |||||||||||||||||||||||| || ||||||||||||    
T  2201210 tttgtaagagcacgctactgtattttagactatttgatctgcaaatttttgtgtttcttacacaatctcgacaagaataatattt 2201294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 36247810 - 36247751
Alignment:
Q  363 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccg 422  Q
    ||||||| |||||| ||| ||| |||||||| ||||||||||||||||||||||||||||    
T  36247810 tagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccg 36247751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 4377219 - 4377162
Alignment:
Q  363 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatc 420  Q
    ||||||| |||||| ||| ||||||||| || ||||||||||||||||||||||||||    
T  4377219 tagtttgcattattgtttctttgaaattatagctccacatgtacctaaagtctggatc 4377162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 54054455 - 54054506
Alignment:
Q  288 ctatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataat 339  Q
    ||||||||| || ||||||||||||||||||||||||||| |||||| ||||    
T  54054455 ctatttgatgcgcgagtttttgtgtttcttacacaatctcgacgagattaat 54054506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 54054716 - 54054763
Alignment:
Q  375 ttatttatttgaaattttaactccacatgtacctaaagtctggatccg 422  Q
    ||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  54054716 ttatttatttgaaattttagctccatatgtacttaaagtctggatccg 54054763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 422
Target Start/End: Complemental strand, 33518009 - 33517953
Alignment:
Q  366 tttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccg 422  Q
    ||||||||||| ||| ||| ||||||||||||| ||| ||||||| |||| ||||||    
T  33518009 tttgtattattgtttctttaaaattttaactccgcatatacctaatgtctagatccg 33517953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 267 - 419
Target Start/End: Complemental strand, 8034838 - 8034690
Alignment:
Q  267 agcacactactgtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgattnnnnnnnncatttagt 366  Q
    ||||||||| ||||| ||||||||||||||| | || |||||||||||||||||||||||| ||||||||||||||||| ||||         | |||||    
T  8034838 agcacactattgtatgttagactatttgatctgcgaatttttgtgtttcttacacaatctcgacgagaataatatttgtcgattaaaaa----aattagt 8034743  T
Q  367 ttgtattattatttatttgaaattttaactccacatgtacctaaagtctggat 419  Q
    ||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8034742 ttgcattattatttatttgaaattttagctccacatgtacctaaagtctggat 8034690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 267 - 422
Target Start/End: Original strand, 7728915 - 7729072
Alignment:
Q  267 agcacactactgtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgatt-----nnnnnnnncat 361  Q
    ||||||||| ||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||             |||    
T  7728915 agcacactagtgtattttagactatttgatctgcgggtttttgtgtttcttacacaatctcaacgataataatatttgttgattataaaaaaaaatacat 7729014  T
Q  362 ttagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccg 422  Q
    |||||||     ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7729015 ttagttt---acattatttatttgaaattttaactccacatgtacctaaagtctgaatccg 7729072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 364 - 424
Target Start/End: Complemental strand, 38572604 - 38572544
Alignment:
Q  364 agtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgtc 424  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38572604 agtttgttttattatttatttgaaattttatctccacatgtacctaaagtctggatccgtc 38572544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 421
Target Start/End: Complemental strand, 24309859 - 24309801
Alignment:
Q  363 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatcc 421  Q
    ||||||| |||||| ||| |||||||||||| || | ||||||||||||||||||||||    
T  24309859 tagtttgcattattgtttctttgaaattttagcttcgcatgtacctaaagtctggatcc 24309801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 423
Target Start/End: Original strand, 52309320 - 52309377
Alignment:
Q  363 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgt 423  Q
    |||||||||||||||||||||| ||||||||    ||||| ||||||||||||||||||||    
T  52309320 tagtttgtattattatttatttaaaatttta---gcacatatacctaaagtctggatccgt 52309377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 424
Target Start/End: Complemental strand, 11640650 - 11640613
Alignment:
Q  387 aattttaactccacatgtacctaaagtctggatccgtc 424  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  11640650 aattttagctccacatgtacctaaagtctagatccgtc 11640613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 30201558 - 30201521
Alignment:
Q  307 ttgtgtttcttacacaatctcaacgagaataatatttg 344  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  30201558 ttgtgtttcttacacaatttcaaagagaataatatttg 30201521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 7728627 - 7728683
Alignment:
Q  26 tataattaataaaacacaaaatcagtaactcagtaaataactctgtctttttccctt 82  Q
    ||||||| |||||||| ||||  ||| ||||| ||||||||||| ||||||||||||    
T  7728627 tataattgataaaacagaaaagaagtgactcattaaataactctctctttttccctt 7728683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 23084443 - 23084479
Alignment:
Q  363 tagtttgtattattatttatttgaaattttaactcca 399  Q
    |||||||||||||||||||||| |||||||| |||||    
T  23084443 tagtttgtattattatttatttaaaattttagctcca 23084479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 36420614 - 36420536
Alignment:
Q  217 agtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaagagcacactactgtattttagactatttga 295  Q
    ||||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36420614 agtattaggttggtagttgcttgctcttttgcttttggcacctttgtaagagcacactactgtattttagactatttga 36420536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 42311479 - 42311555
Alignment:
Q  267 agcacactactgtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatattt 343  Q
    ||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||    
T  42311479 agcacactactgtatattagactatttgatctgcgagtttttgtgtttcttacacaatctcgacgagaataatattt 42311555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 39299273 - 39299325
Alignment:
Q  363 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtct 415  Q
    ||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||    
T  39299273 tagtttgcattattgtttttttaaaattttaactccacatgtacctaaagtct 39299325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 41006164 - 41006125
Alignment:
Q  382 tttgaaattttaactccacatgtacctaaagtctggatcc 421  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  41006164 tttgaaattttagctccacatgtacgtaaagtctggatcc 41006125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 422
Target Start/End: Complemental strand, 36420542 - 36420500
Alignment:
Q  380 tatttgaaattttaactccacatgtacctaaagtctggatccg 422  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||    
T  36420542 tatttgaaattttagctccagatgtacctaaaatctggatccg 36420500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 363 - 421
Target Start/End: Original strand, 7607393 - 7607451
Alignment:
Q  363 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatcc 421  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7607393 tagtttgtattattatttatttgaaattttagctccacatgtacctaaagtctggatcc 7607451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 424
Target Start/End: Complemental strand, 26459673 - 26459614
Alignment:
Q  365 gtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgtc 424  Q
    ||||| || ||| ||| |||||||||||| ||| ||||||||||||||||| ||||||||    
T  26459673 gtttgcataattgtttctttgaaattttagctcaacatgtacctaaagtctcgatccgtc 26459614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 424
Target Start/End: Complemental strand, 36744920 - 36744858
Alignment:
Q  363 tagtttgtattattatttatttgaaattttaa-ctccacatgtacctaaagtctggatccgtc 424  Q
    ||||||| |||||| ||| ||| ||||||| | |||||||||||||||||||||| |||||||    
T  36744920 tagtttgcattattgtttctttaaaatttttagctccacatgtacctaaagtctgaatccgtc 36744858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 363 - 424
Target Start/End: Complemental strand, 33704086 - 33704025
Alignment:
Q  363 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgtc 424  Q
    ||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||    
T  33704086 tagtttgtattattatttatttgaaattttacccccacatatacctaaattctggatccgtc 33704025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 363 - 424
Target Start/End: Complemental strand, 35188022 - 35187961
Alignment:
Q  363 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgtc 424  Q
    |||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||    
T  35188022 tagtttatattattatttatttaaaattttagctccacatgaacctaaagtctggatccgtc 35187961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 423
Target Start/End: Complemental strand, 21883230 - 21883171
Alignment:
Q  364 agtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgt 423  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||||| | |||||||||    
T  21883230 agtttgtattattatttatttaaaattttagttccacatgtacctaaaatatggatccgt 21883171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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