View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17532_low_12 (Length: 426)
Name: NF17532_low_12
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17532_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 294915 - 294525
Alignment:
| Q |
19 |
gttttgacaatctatctggaaggagaaatttgaagactggtgattttcttgttggagataaaatcggtgaagggtcatttggtgttgtttattctggtgt |
118 |
Q |
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| T |
294915 |
gttttgacaatctatctggaaggagaaacttgaagactggtgattttcttgttggagataaaatcggtgaagggtcatttggtgttgtttattctggtgt |
294816 |
T |
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| Q |
119 |
tttgatctcaaagaatgtggtggatgttgaggaggaaaagagaggaagatccaaggcaacaaggttggaacccaaatctaaggataaagttattctaaaa |
218 |
Q |
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| T |
294815 |
tttgatctcaaagaatgtggtggatgttgaggaggacaagagaggaagatccaaggcaacaaggttggaacccaaatctaaggataaagttattctaaaa |
294716 |
T |
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| Q |
219 |
aaggtatgcatcattaacccctttcttgttgtctaaataaaattgaattttagtataaggtaggattctgcaatgtgaatgctcagagcaaccaaaacag |
318 |
Q |
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| T |
294715 |
aaggtatgcatcattaaccccttacttgttgtctaaataaaattgaattttagtataaggtaggattctgcaatgtgaatgctcagagcaaccaaaatag |
294616 |
T |
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| Q |
319 |
gctatagcacagaccgacacctcggattgaagatgtgtccgcggcttggcatgacacatgtgattacattcaattatttggccacgacaca |
409 |
Q |
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| T |
294615 |
gctatagcacagactgacacctcggattgaagatgtgtccgcggcttggcatgacacatgtgattacattcaattatttggccacgacaca |
294525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 27490790 - 27490881
Alignment:
| Q |
31 |
tatctggaaggagaaatttgaagactggtgattttcttg-ttggagataaaatcggtgaagggtcatttggtgttgtttattctggtgttttg |
122 |
Q |
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|||||||||||||||||||||||| ||||||| |||| |||| | ||| || || |||||||||||||||||||||||||||| ||||||| |
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| T |
27490790 |
tatctggaaggagaaatttgaagaggagtgattt-cttgattggtggtaagataggagaagggtcatttggtgttgtttattctgctgttttg |
27490881 |
T |
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