View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17532_low_13 (Length: 423)

Name: NF17532_low_13
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17532_low_13
NF17532_low_13
[»] chr7 (6 HSPs)
chr7 (25-404)||(48089611-48089990)
chr7 (18-64)||(1692212-1692258)
chr7 (235-281)||(29235584-29235630)
chr7 (239-281)||(35015806-35015848)
chr7 (237-281)||(12287216-12287260)
chr7 (237-281)||(26576060-26576104)
[»] chr1 (6 HSPs)
chr1 (235-281)||(9693961-9694007)
chr1 (235-279)||(16255383-16255427)
chr1 (238-281)||(5959291-5959334)
chr1 (20-65)||(10780678-10780723)
chr1 (236-281)||(20381156-20381201)
chr1 (237-281)||(8259385-8259429)
[»] chr2 (5 HSPs)
chr2 (237-281)||(22705697-22705741)
chr2 (235-281)||(7315275-7315321)
chr2 (235-281)||(25322944-25322990)
chr2 (236-281)||(38935229-38935274)
chr2 (237-281)||(15464019-15464063)
[»] chr4 (10 HSPs)
chr4 (235-281)||(44707638-44707685)
chr4 (236-281)||(25197344-25197390)
chr4 (237-281)||(36755250-36755294)
chr4 (237-281)||(38476180-38476224)
chr4 (18-65)||(4377846-4377893)
chr4 (239-281)||(16529970-16530012)
chr4 (235-281)||(44515994-44516040)
chr4 (240-281)||(46433136-46433177)
chr4 (235-278)||(15024602-15024646)
chr4 (235-271)||(28992588-28992624)
[»] chr3 (4 HSPs)
chr3 (238-281)||(26952456-26952499)
chr3 (237-281)||(47342454-47342499)
chr3 (238-278)||(51370442-51370483)
chr3 (237-281)||(47864950-47864994)
[»] scaffold0355 (1 HSPs)
scaffold0355 (235-281)||(2694-2740)
[»] chr6 (2 HSPs)
chr6 (237-281)||(15134951-15134995)
chr6 (237-281)||(32183913-32183957)
[»] chr5 (3 HSPs)
chr5 (237-281)||(35377863-35377907)
chr5 (238-278)||(379314-379354)
chr5 (237-281)||(19279567-19279611)
[»] scaffold0039 (1 HSPs)
scaffold0039 (238-281)||(94248-94291)
[»] scaffold0001 (1 HSPs)
scaffold0001 (238-281)||(428427-428470)
[»] chr8 (5 HSPs)
chr8 (238-281)||(20765738-20765781)
chr8 (239-281)||(40216493-40216535)
chr8 (235-281)||(43417814-43417860)
chr8 (238-278)||(6148350-6148390)
chr8 (237-281)||(37127578-37127622)
[»] scaffold0006 (1 HSPs)
scaffold0006 (235-281)||(178295-178341)
[»] scaffold0069 (1 HSPs)
scaffold0069 (236-281)||(60945-60990)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 25 - 404
Target Start/End: Original strand, 48089611 - 48089990
Alignment:
Q  25 agctatagctccacatggcaccaacgtgcatccgcccctgaggaggacttacacaaaaaatgatcgagggactttgacaacttcactattcactaagacc 124  Q
    |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48089611 agctatagctccacatggcatcaatgtgcatccgcccttgaggaggacttacacaaaaaatgatcgagggactttgacaacttcactattcactaagacc 48089710  T
Q  125 atccacaagcgtgatttcttcactaatttagcacacattcttattgctgactagaaaatttggaggtttaaagagaatgttgaaacactttctatttcta 224  Q
    ||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  48089711 atccagaagtgtgattgcttcactaatttagcacacattcttattgctgactagaaaatttggaggtttaaagagaatggtgaagcactttctatttcta 48089810  T
Q  225 nnnnnnnnaacccatttaataaatcataatgaaatatataaattttgttgaaatgtactccatccgtctcacattagaaatcatagagttctcannnnnn 324  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  48089811 ttttttttaacccatttaataaatcataatgaaatatataaattttgttgaaatgtactccatccgtctcacattagaaatcatagagttctcacttttt 48089910  T
Q  325 nnagaggcgagttttgatacttatgagtcgtagtttcaagtggtttgttttaaggctttctcctgatctatggagtaaaa 404  Q
      ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || ||||||||||||||    
T  48089911 ttagaggcgagttttgatacttatgagtcgtagtttcaagtggtttgttcttaggctttctcttggtctatggagtaaaa 48089990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 1692212 - 1692258
Alignment:
Q  18 catgtggagctatagctccacatggcaccaacgtgcatccgcccctg 64  Q
    |||| |||||| ||||||||||| ||||||| |||||||||||||||    
T  1692212 catgcggagctttagctccacatagcaccaatgtgcatccgcccctg 1692258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 29235630 - 29235584
Alignment:
Q  235 cccatttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||||| |||| ||||| ||||||||| ||||||||||    
T  29235630 cccatttaataaatcttaataaaataaataaattttattgaaatgta 29235584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 35015848 - 35015806
Alignment:
Q  239 tttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||    
T  35015848 tttaataaatcttaataaaataaataaattttgttgaaatgta 35015806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 12287216 - 12287260
Alignment:
Q  237 catttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||| |||| ||||  ||||||||||||||||||||    
T  12287216 catttaataaatcttaataaaatgaataaattttgttgaaatgta 12287260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 26576104 - 26576060
Alignment:
Q  237 catttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    |||||||||| || |||| ||||| ||||||||||||||||||||    
T  26576104 catttaataattcttaataaaataaataaattttgttgaaatgta 26576060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 9694007 - 9693961
Alignment:
Q  235 cccatttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||    
T  9694007 cccatttcataaatcataatgaaataaataaattttgttgaaatgta 9693961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 16255427 - 16255383
Alignment:
Q  235 cccatttaataaatcataatgaaatatataaattttgttgaaatg 279  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||    
T  16255427 cccatttaataaatcttaataaaataaataaattttgttgaaatg 16255383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 281
Target Start/End: Complemental strand, 5959334 - 5959291
Alignment:
Q  238 atttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||    
T  5959334 atttaataaatcttaataaaataaataaattttgttgaaatgta 5959291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 10780723 - 10780678
Alignment:
Q  20 tgtggagctatagctccacatggcaccaacgtgcatccgcccctga 65  Q
    ||||||||||||||||||||| || ||||| || ||||||||||||    
T  10780723 tgtggagctatagctccacattgccccaacatggatccgcccctga 10780678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 20381201 - 20381156
Alignment:
Q  236 ccatttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    |||||||| ||||| |||| ||||| ||||||||||||||||||||    
T  20381201 ccatttaaaaaatcttaataaaataaataaattttgttgaaatgta 20381156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 8259429 - 8259385
Alignment:
Q  237 catttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||  |||| ||||| ||||||||||||||||||||    
T  8259429 catttaataaattttaataaaataaataaattttgttgaaatgta 8259385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 22705741 - 22705697
Alignment:
Q  237 catttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||    
T  22705741 catttcataaatcataatgaaataaataaattttgttgaaatgta 22705697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 7315321 - 7315275
Alignment:
Q  235 cccatttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  7315321 cccatttaataaatcttaataaaataaataaattttgttgaaatgta 7315275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 25322944 - 25322990
Alignment:
Q  235 cccatttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  25322944 cccatttaataaatcttaataaaataaataaattttgttgaaatgta 25322990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 38935229 - 38935274
Alignment:
Q  236 ccatttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||||    
T  38935229 ccatttaataaatcttaataaaataaataaattttgttgaaatgta 38935274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 15464019 - 15464063
Alignment:
Q  237 catttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||  |||| ||||| ||||||||||||||||||||    
T  15464019 catttaataaattttaataaaataaataaattttgttgaaatgta 15464063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 44707685 - 44707638
Alignment:
Q  235 cccatttaataaatcataatgaaatatataaa-ttttgttgaaatgta 281  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||    
T  44707685 cccatttaataaatcataatgaaataaataaatttttgttgaaatgta 44707638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 25197390 - 25197344
Alignment:
Q  236 ccatttaataaatcataatgaaatatataaatttt-gttgaaatgta 281  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||    
T  25197390 ccatttaataaatcataatgaaataaataaattttagttgaaatgta 25197344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 36755250 - 36755294
Alignment:
Q  237 catttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||    
T  36755250 catttaataaatcttaataaaataaataaattttgttgaaatgta 36755294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 38476224 - 38476180
Alignment:
Q  237 catttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||    
T  38476224 catttaataaatcttaataaaataaataaattttgttgaaatgta 38476180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 4377846 - 4377893
Alignment:
Q  18 catgtggagctatagctccacatggcaccaacgtgcatccgcccctga 65  Q
    ||||||||||||||||||||||| || ||||| || ||||||||||||    
T  4377846 catgtggagctatagctccacattgccccaacatggatccgcccctga 4377893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 16529970 - 16530012
Alignment:
Q  239 tttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||    
T  16529970 tttaataaatcttaataaaataaataaattttgttgaaatgta 16530012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 44516040 - 44515994
Alignment:
Q  235 cccatttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||||  |||| ||||| ||||||||||||||||||||    
T  44516040 cccatttaataaatattaataaaataaataaattttgttgaaatgta 44515994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 46433177 - 46433136
Alignment:
Q  240 ttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  46433177 ttaataaatcttaatgaattaaataaattttgttgaaatgta 46433136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 15024646 - 15024602
Alignment:
Q  235 cccatttaataaatcataatgaaatatata-aattttgttgaaat 278  Q
    |||||||||||||||||||||||||| ||| | ||||||||||||    
T  15024646 cccatttaataaatcataatgaaataaatatatttttgttgaaat 15024602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 28992624 - 28992588
Alignment:
Q  235 cccatttaataaatcataatgaaatatataaattttg 271  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  28992624 cccatttaataaatcataatgaaataaataaaatttg 28992588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 281
Target Start/End: Complemental strand, 26952499 - 26952456
Alignment:
Q  238 atttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||||||||||||| |||| |||||||||||||||    
T  26952499 atttaataaatcataatgaaataaataatttttgttgaaatgta 26952456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 47342454 - 47342499
Alignment:
Q  237 catttaataaatcataatgaaatatataaatttt-gttgaaatgta 281  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||    
T  47342454 catttaataaatcataatgaaataaataaattttggttgaaatgta 47342499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 51370442 - 51370483
Alignment:
Q  238 atttaataaatcataatgaaatatataaa-ttttgttgaaat 278  Q
    ||||||||||||||||||||||| ||||| ||||||||||||    
T  51370442 atttaataaatcataatgaaataaataaatttttgttgaaat 51370483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 47864994 - 47864950
Alignment:
Q  237 catttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||  |||| ||||| ||||||||||||||||||||    
T  47864994 catttaataaattttaataaaataaataaattttgttgaaatgta 47864950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 2740 - 2694
Alignment:
Q  235 cccatttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  2740 cccatttaataaatcttaataaaataaataaattttgttgaaatgta 2694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 15134995 - 15134951
Alignment:
Q  237 catttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||    
T  15134995 catttaataaatcttaataaaataaataaattttgttgaaatgta 15134951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 32183913 - 32183957
Alignment:
Q  237 catttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||| |||| ||||| |||| |||||||||||||||    
T  32183913 catttaataaatcttaataaaataaataatttttgttgaaatgta 32183957  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 35377907 - 35377863
Alignment:
Q  237 catttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||    
T  35377907 catttaataaatcttaataaaataaataaattttgttgaaatgta 35377863  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 379314 - 379354
Alignment:
Q  238 atttaataaatcataatgaaatatataaattttgttgaaat 278  Q
    ||||||||||||||||||||||| ||||| |||||| ||||    
T  379314 atttaataaatcataatgaaataaataaaatttgttaaaat 379354  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 19279567 - 19279611
Alignment:
Q  237 catttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||  |||| ||||| ||||||||||||||||||||    
T  19279567 catttaataaatattaataaaataaataaattttgttgaaatgta 19279611  T

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Target: scaffold0039 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 281
Target Start/End: Complemental strand, 94291 - 94248
Alignment:
Q  238 atttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||    
T  94291 atttaataaatcttaataaaataaataaattttgttgaaatgta 94248  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 428427 - 428470
Alignment:
Q  238 atttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||    
T  428427 atttaataaatcttaataaaataaataaattttgttgaaatgta 428470  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 20765738 - 20765781
Alignment:
Q  238 atttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||    
T  20765738 atttaataaatcttaataaaataaataaattttgttgaaatgta 20765781  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 40216493 - 40216535
Alignment:
Q  239 tttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||    
T  40216493 tttaataaatcttaataaaataaataaattttgttgaaatgta 40216535  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 43417860 - 43417814
Alignment:
Q  235 cccatttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||||| |||| ||||| | ||||||||||||||||||    
T  43417860 cccatttaataaatcttaataaaataaagaaattttgttgaaatgta 43417814  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 6148390 - 6148350
Alignment:
Q  238 atttaataaatcataatgaaatatataaattttgttgaaat 278  Q
    |||||||||||| |||| ||||| |||||||||||||||||    
T  6148390 atttaataaatcttaataaaataaataaattttgttgaaat 6148350  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 37127622 - 37127578
Alignment:
Q  237 catttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||| ||| |||| ||||| ||||||||||||||||||||    
T  37127622 catttaatagatcttaataaaataaataaattttgttgaaatgta 37127578  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 178341 - 178295
Alignment:
Q  235 cccatttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    ||||||||||||||| |||| ||||| ||||||||| ||||||||||    
T  178341 cccatttaataaatcttaataaaataaataaattttattgaaatgta 178295  T

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Target: scaffold0069 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 60990 - 60945
Alignment:
Q  236 ccatttaataaatcataatgaaatatataaattttgttgaaatgta 281  Q
    |||||||| ||||| |||| ||||| ||||||||||||||||||||    
T  60990 ccatttaaaaaatcttaataaaataaataaattttgttgaaatgta 60945  T

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