View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17532_low_15 (Length: 330)
Name: NF17532_low_15
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17532_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 36149381 - 36149690
Alignment:
| Q |
1 |
ccttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccatggtgtgtg |
100 |
Q |
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| T |
36149381 |
ccttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccattgtgtgtg |
36149480 |
T |
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| Q |
101 |
gaattacttcgacaccatgcagtggtggcggcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttc |
200 |
Q |
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| T |
36149481 |
gaattacttcgacaccatgcagtggtggcggcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttc |
36149580 |
T |
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| Q |
201 |
ttctttgtcatctattttgagtgcatatgtgtaattgacaagttcttcttctcggtctttgtgaatttgagcttccatgatgtgtggaatcacttccact |
300 |
Q |
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| T |
36149581 |
ttctttgtcatctattttgagtgcacatgtgtaattgacaagtgcttcttcttggtctttgtgaatttgagcttccatgatgtgtggaatcacttccact |
36149680 |
T |
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| Q |
301 |
tcttgcagct |
310 |
Q |
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|||||||||| |
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| T |
36149681 |
tcttgcagct |
36149690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 36083446 - 36083533
Alignment:
| Q |
146 |
gagaatcattttccatcatgggaacttcttcttgt---tgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
230 |
Q |
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| T |
36083446 |
gagaatcactttccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttgagtgcacatgt |
36083533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 230
Target Start/End: Original strand, 36149636 - 36149799
Alignment:
| Q |
70 |
tctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcggcggtg------aaggaggcggagaatcattttccatca |
163 |
Q |
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| T |
36149636 |
tctttgtgaatttgagcttccatgatgtgtggaatcacttccacttcttgcagctgtggcggtggtggtggtgaaggaggcggagaatcactttccttca |
36149735 |
T |
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| Q |
164 |
tgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
230 |
Q |
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| T |
36149736 |
tttgcacttctttttctagcttgggagag---tcttcttctttctcatctattttgagtgcacatgt |
36149799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 36149759 - 36149822
Alignment:
| Q |
10 |
ggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
73 |
Q |
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| T |
36149759 |
ggagagtcttcttctttctcatctattttgagtgcacatgtttggaggagaagtgcttcttctt |
36149822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26527613 - 26527381
Alignment:
| Q |
1 |
ccttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccatggtgtgtg |
100 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | |
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| T |
26527613 |
ccttgcttaggagactgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacatgagcttccatggtgtggg |
26527514 |
T |
|
| Q |
101 |
gaattacttcgacaccatgcagtggtggcg------gcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtg |
194 |
Q |
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| T |
26527513 |
gaatcacttccacttcatacagcagtggcggtggtagtggtgaaggaggcggaaaatcactttcattcatgtgcacttctttttctagcttgggagagtg |
26527414 |
T |
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| Q |
195 |
ttcttcttctttgtcatctattttgagtgcatatgt |
230 |
Q |
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| T |
26527413 |
---ttcttctatctcatctattttgagtgcacatgt |
26527381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 26527421 - 26527358
Alignment:
| Q |
10 |
ggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
73 |
Q |
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||||||||||||||| | || |||||||| ||||| |||||||||| || ||||||||||||| |
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| T |
26527421 |
ggagagtgttcttctatctcatctattttgagtgcacatgtttggaggagaagtgcttcttctt |
26527358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 26527544 - 26527498
Alignment:
| Q |
256 |
tctttgtgaatttgagcttccatgatgtgtggaatcacttccacttc |
302 |
Q |
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| T |
26527544 |
tctttgtgaacatgagcttccatggtgtggggaatcacttccacttc |
26527498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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