View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17532_low_18 (Length: 310)

Name: NF17532_low_18
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17532_low_18
NF17532_low_18
[»] chr2 (19 HSPs)
chr2 (5-294)||(39814077-39814366)
chr2 (5-223)||(39910562-39910779)
chr2 (5-223)||(39927167-39927369)
chr2 (16-186)||(39825657-39825827)
chr2 (16-63)||(39902350-39902397)
chr2 (221-256)||(2841086-2841121)
chr2 (221-256)||(8973315-8973350)
chr2 (221-256)||(8979325-8979360)
chr2 (221-256)||(8984696-8984731)
chr2 (221-256)||(9008024-9008059)
chr2 (221-256)||(9023450-9023485)
chr2 (221-256)||(9026789-9026824)
chr2 (221-256)||(30732011-30732046)
chr2 (221-256)||(30733991-30734026)
chr2 (221-256)||(32918083-32918118)
chr2 (221-256)||(43850052-43850087)
chr2 (222-256)||(19232469-19232503)
chr2 (255-289)||(39910540-39910574)
chr2 (255-287)||(39927147-39927179)
[»] chr8 (5 HSPs)
chr8 (221-256)||(37679758-37679793)
chr8 (221-256)||(40054315-40054350)
chr8 (221-256)||(41841221-41841256)
chr8 (221-256)||(44878986-44879021)
chr8 (221-256)||(44880900-44880935)
[»] chr6 (2 HSPs)
chr6 (221-256)||(10791721-10791756)
chr6 (221-256)||(10795959-10795994)
[»] chr5 (3 HSPs)
chr5 (221-256)||(1716521-1716556)
chr5 (221-256)||(3643643-3643678)
chr5 (221-256)||(7524971-7525006)
[»] chr4 (7 HSPs)
chr4 (221-256)||(3461211-3461246)
chr4 (221-256)||(11652461-11652496)
chr4 (221-256)||(26984736-26984771)
chr4 (221-256)||(26998809-26998844)
chr4 (221-256)||(49106598-49106633)
chr4 (221-256)||(49108702-49108737)
chr4 (221-256)||(50077268-50077303)
[»] chr1 (18 HSPs)
chr1 (221-256)||(14652528-14652563)
chr1 (221-256)||(14654409-14654444)
chr1 (221-256)||(14662319-14662354)
chr1 (221-256)||(14664200-14664235)
chr1 (221-256)||(14667180-14667215)
chr1 (221-256)||(14669778-14669813)
chr1 (221-256)||(14674484-14674519)
chr1 (221-256)||(14676635-14676670)
chr1 (221-256)||(14679862-14679897)
chr1 (221-256)||(14681602-14681637)
chr1 (221-256)||(14683753-14683788)
chr1 (221-256)||(14706091-14706126)
chr1 (221-256)||(14708581-14708616)
chr1 (221-256)||(14716294-14716329)
chr1 (221-256)||(28366268-28366303)
chr1 (221-256)||(33988073-33988108)
chr1 (221-256)||(38175599-38175634)
chr1 (221-253)||(37422175-37422207)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 5 - 294
Target Start/End: Complemental strand, 39814366 - 39814077
Alignment:
Q  5 cctcaattgctttacgacaacatcaaaaacaattatgttcctatccaactcgttgtcaaggacatctatttgaaagaatattgcgaattggatttgaatt 104  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814366 cctcaattgctttacgacaacatcaaaaagaattatgttcctatccaactcgttgtcaaggacatctatttgaaagaatattgcgaattggatttgaatt 39814267  T
Q  105 gtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaagatctggctgaccgattaccataacgggat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39814266 gtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaagatctggctgaccgattacaataacgggat 39814167  T
Q  205 tattactacacacaacctacacttgatcatagccaaaaggccgagaaaggtacacacaacctagatccttacaaataaacatatacatag 294  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814166 tatgactacacacaacctacacttgatcatagccaaaaggccgagaaaggtacacacaacctagatccttacaaataaacatatacatag 39814077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 39910779 - 39910562
Alignment:
Q  5 cctcaattgctttacgacaacatcaaaaacaattatgttcctatccaactcgttgtcaaggacatctatttgaaagaatattgcgaattggatttgaatt 104  Q
    |||||||| ||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  39910779 cctcaatttctttatgacaacatcaaaaacaattatgttgatatccaactcgttgtcaaggacatctatt-gaaagaatattgtgaattggatttgaatt 39910681  T
Q  105 gtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaagatctggctgaccgattaccataacgggat 204  Q
    |  ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||    
T  39910680 gactgcaatgtgactaacacagccagctgtctgccacatctagaccgtctgatattgattgaacgtttaagatctggctgaccggttacaataacgggat 39910581  T
Q  205 tattactacacacaaccta 223  Q
    ||| |||||||||||||||    
T  39910580 tataactacacacaaccta 39910562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 39927369 - 39927167
Alignment:
Q  5 cctcaattgctttacgacaacatcaaaaacaattatgttcctatccaactcgttgtcaaggacatctatttgaaagaatattgcgaattggatttgaatt 104  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  39927369 cctcaattgctttacgacaacatcaaaaacaattatgtttctatccaactggttgtcaaggacatctatttgaaacaatattgcgaactggatttgaatt 39927270  T
Q  105 gtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaagatctggctgaccgattaccataacgggat 204  Q
    |||     |||||||||||||||||| |||||||||||           ||||||||||| ||||||||||||||||| ||||| |||| ||||||||||    
T  39927269 gtg-----tgtgactaacgcagccagttgtctgccaca-----------tgatcttgattgaacgtttaagatctggcagaccggttacaataacgggat 39927186  T
Q  205 tattactacacacaaccta 223  Q
    ||| |||||||||||||||    
T  39927185 tatgactacacacaaccta 39927167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 39825827 - 39825657
Alignment:
Q  16 ttacgacaacatcaaaaacaattatgttcctatccaactcgttgtcaaggac-atctatttgaaagaatattgcgaattggatttgaattgtgtgcaatg 114  Q
    |||||||||||| |||||||||||||||  ||||||||| ||||||| |||| || |||   ||||| |||||||||| ||||||||| ||||||||||     
T  39825827 ttacgacaacataaaaaacaattatgttgttatccaacttgttgtcatggaccatttatca-aaagactattgcgaataggatttgaactgtgtgcaatc 39825729  T
Q  115 tgacta-acgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaagatctggctgac 186  Q
    | |||  ||| || || ||||| ||||||||||||||||||||||  |||| |||||||||||| ||||||||    
T  39825728 taacttcacg-agtcaactgtcagccacatctagaccgtctgatcaagattgaacgtttaagatgtggctgac 39825657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 39902397 - 39902350
Alignment:
Q  16 ttacgacaacatcaaaaacaattatgttcctatccaactcgttgtcaa 63  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||    
T  39902397 ttacgacaacatcaaaaacaattattttgctatccaactcgttgtcaa 39902350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 2841086 - 2841121
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  2841086 ctacacttgatcttagccaaaaggccgagaaaggta 2841121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 8973350 - 8973315
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  8973350 ctacacttgatcttagccaaaaggccgagaaaggta 8973315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 8979360 - 8979325
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  8979360 ctacacttgatcttagccaaaaggccgagaaaggta 8979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 8984731 - 8984696
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  8984731 ctacacttgatcttagccaaaaggccgagaaaggta 8984696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 9008059 - 9008024
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  9008059 ctacacttgatcttagccaaaaggccgagaaaggta 9008024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 9023485 - 9023450
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  9023485 ctacacttgatcttagccaaaaggccgagaaaggta 9023450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 9026824 - 9026789
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  9026824 ctacacttgatcttagccaaaaggccgagaaaggta 9026789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 30732046 - 30732011
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  30732046 ctacacttgatcttagccaaaaggccgagaaaggta 30732011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 30734026 - 30733991
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  30734026 ctacacttgatcttagccaaaaggccgagaaaggta 30733991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 32918118 - 32918083
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  32918118 ctacacttgatcttagccaaaaggccgagaaaggta 32918083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 43850087 - 43850052
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  43850087 ctacacttgatcttagccaaaaggccgagaaaggta 43850052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 19232469 - 19232503
Alignment:
Q  222 tacacttgatcatagccaaaaggccgagaaaggta 256  Q
    ||||||||||| |||||||||||||||||||||||    
T  19232469 tacacttgatcttagccaaaaggccgagaaaggta 19232503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 289
Target Start/End: Complemental strand, 39910574 - 39910540
Alignment:
Q  255 tacacacaacctagatccttacaaataaacatata 289  Q
    ||||||||||||||||||| |||||||||||||||    
T  39910574 tacacacaacctagatcctaacaaataaacatata 39910540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 39927179 - 39927147
Alignment:
Q  255 tacacacaacctagatccttacaaataaacata 287  Q
    |||||||||||||||||| ||||||||||||||    
T  39927179 tacacacaacctagatccgtacaaataaacata 39927147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 37679793 - 37679758
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  37679793 ctacacttgatcttagccaaaaggccgagaaaggta 37679758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 40054350 - 40054315
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  40054350 ctacacttgatcttagccaaaaggccgagaaaggta 40054315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 41841221 - 41841256
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  41841221 ctacacttgatcttagccaaaaggccgagaaaggta 41841256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 44879021 - 44878986
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  44879021 ctacacttgatcttagccaaaaggccgagaaaggta 44878986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 44880900 - 44880935
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  44880900 ctacacttgatcttagccaaaaggccgagaaaggta 44880935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 10791721 - 10791756
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  10791721 ctacacttgatcttagccaaaaggccgagaaaggta 10791756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 10795959 - 10795994
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  10795959 ctacacttgatcttagccaaaaggccgagaaaggta 10795994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 1716521 - 1716556
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  1716521 ctacacttgatcttagccaaaaggccgagaaaggta 1716556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 3643678 - 3643643
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  3643678 ctacacttgatcttagccaaaaggccgagaaaggta 3643643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 7525006 - 7524971
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  7525006 ctacacttgatcttagccaaaaggccgagaaaggta 7524971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 3461211 - 3461246
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  3461211 ctacacttgatcttagccaaaaggccgagaaaggta 3461246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 11652461 - 11652496
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  11652461 ctacacttgatcttagccaaaaggccgagaaaggta 11652496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 26984736 - 26984771
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  26984736 ctacacttgatcttagccaaaaggccgagaaaggta 26984771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 26998809 - 26998844
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  26998809 ctacacttgatcttagccaaaaggccgagaaaggta 26998844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 49106598 - 49106633
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  49106598 ctacacttgatcttagccaaaaggccgagaaaggta 49106633  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 49108702 - 49108737
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  49108702 ctacacttgatcttagccaaaaggccgagaaaggta 49108737  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 50077268 - 50077303
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  50077268 ctacacttgatcttagccaaaaggccgagaaaggta 50077303  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 14652563 - 14652528
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  14652563 ctacacttgatcttagccaaaaggccgagaaaggta 14652528  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 14654409 - 14654444
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  14654409 ctacacttgatcttagccaaaaggccgagaaaggta 14654444  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 14662354 - 14662319
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  14662354 ctacacttgatcttagccaaaaggccgagaaaggta 14662319  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 14664200 - 14664235
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  14664200 ctacacttgatcttagccaaaaggccgagaaaggta 14664235  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 14667180 - 14667215
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  14667180 ctacacttgatcttagccaaaaggccgagaaaggta 14667215  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 14669778 - 14669813
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  14669778 ctacacttgatcttagccaaaaggccgagaaaggta 14669813  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 14674519 - 14674484
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  14674519 ctacacttgatcttagccaaaaggccgagaaaggta 14674484  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 14676670 - 14676635
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  14676670 ctacacttgatcttagccaaaaggccgagaaaggta 14676635  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 14679897 - 14679862
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  14679897 ctacacttgatcttagccaaaaggccgagaaaggta 14679862  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 14681637 - 14681602
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  14681637 ctacacttgatcttagccaaaaggccgagaaaggta 14681602  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 14683788 - 14683753
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  14683788 ctacacttgatcttagccaaaaggccgagaaaggta 14683753  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 14706126 - 14706091
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  14706126 ctacacttgatcttagccaaaaggccgagaaaggta 14706091  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 14708616 - 14708581
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  14708616 ctacacttgatcttagccaaaaggccgagaaaggta 14708581  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 14716329 - 14716294
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  14716329 ctacacttgatcttagccaaaaggccgagaaaggta 14716294  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 28366268 - 28366303
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  28366268 ctacacttgatcttagccaaaaggccgagaaaggta 28366303  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 33988108 - 33988073
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  33988108 ctacacttgatcttagccaaaaggccgagaaaggta 33988073  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 38175599 - 38175634
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaaggta 256  Q
    |||||||||||| |||||||||||||||||||||||    
T  38175599 ctacacttgatcttagccaaaaggccgagaaaggta 38175634  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 37422207 - 37422175
Alignment:
Q  221 ctacacttgatcatagccaaaaggccgagaaag 253  Q
    |||||||||||| ||||||||||||||||||||    
T  37422207 ctacacttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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