View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17532_low_2 (Length: 746)
Name: NF17532_low_2
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17532_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 18 - 634
Target Start/End: Complemental strand, 52855813 - 52855204
Alignment:
| Q |
18 |
gctagtacatactactgttaaaaataaagtgtatgcattctgtaattcttaatactctgttgatcttgactatatattttcacccctttgcagaagcttc |
117 |
Q |
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| T |
52855813 |
gctagtacatactactgttaaaaataaagtgtatgcattcagtaattattaatactctgttgatcttgactatatattttcacccctttgcagaagcttc |
52855714 |
T |
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| Q |
118 |
acgaagaccttgagaattgcacgtgcggatgcaaacaaagtacataaacttattgtgttttatgagattctatggcactgtgcatagaagtcaaggtttt |
217 |
Q |
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| T |
52855713 |
acgaagaccttgagaattgcacgtgcggatgcaaacaaagtacataaacttattgtgttttatgagattctatggcactgtgcatagaagtcaaggtttt |
52855614 |
T |
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| Q |
218 |
gatggaaactgatttttgtaccttccaactttaaaagaataacgaaggaaattgtacatacaacgtatgttgtaatctacctgtggtagacgtagtctag |
317 |
Q |
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| T |
52855613 |
gatggaaactgatttttgtaccttccaactttaaaagaataacgaaggaaattgtacatacaacgtatgttgtaatctacctgtggtagacgtagtctag |
52855514 |
T |
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| Q |
318 |
aaatatctattccttttcaaaatttaatagctatatttgaaagtagaggttgatttttggattgtttcttgtttgggtacgtgtgatgcaatgaataact |
417 |
Q |
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| T |
52855513 |
aaatatctattccttttcaaaatttgatagctatatttgaaagtagaggttgatttttggattgtttcttgtttgggtacgtgtgatgcaatgaataact |
52855414 |
T |
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| Q |
418 |
tattcttatggaatcagaagaatagaagcgagagcgggactagttagagatctggaataaaacaagcaatcctgtttagtcatgtgccatagtatgaatc |
517 |
Q |
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| T |
52855413 |
tattcttatggaatcaaaagaatagaagcgagagcgggactagttagagatctggaataaatcaagcaatcctgtttagtcatgtgccaaagtataaatc |
52855314 |
T |
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| Q |
518 |
ttctctccccttccttccctcnnnnnnnnnnnnnnnnctccatttcacggggaacagaattagtgtaaggagggatttgactctcttccattccctttac |
617 |
Q |
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| T |
52855313 |
ttctctccccttccttccctc------aaaaaaaaaactccatttcacggggaacagaattagtgtaaggagggatttgactctcttccattccc-ttac |
52855221 |
T |
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| Q |
618 |
attctaaaagttgaacc |
634 |
Q |
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| T |
52855220 |
attctaaaagttgaacc |
52855204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 605 - 721
Target Start/End: Complemental strand, 52855205 - 52855088
Alignment:
| Q |
605 |
ccattccctttacattctaaaagttgaaccgaacgaagnnnnnnnnn-tatcgcctactatttcctccaaaaccctcaaacaagaggaactcttaaagtt |
703 |
Q |
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| T |
52855205 |
ccattccctttacattctaaaagttgaaccgaacgaagaaaaaaataatttcgcctactatttcctccaaaaccctcaaacaagaggaactcttaaagtt |
52855106 |
T |
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| Q |
704 |
ctaactacataggagtgt |
721 |
Q |
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| T |
52855105 |
ctaactacttaggagtgt |
52855088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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