View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17532_low_20 (Length: 293)
Name: NF17532_low_20
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17532_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 4903611 - 4903335
Alignment:
| Q |
1 |
ctaaaatggtatatgcaagttttgtcgataatttctgaagttaagttacacaaaatggttttgttgacaggttcgactggccatggatacatggcgccag |
100 |
Q |
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| T |
4903611 |
ctaaaatggtatatgcaagttttgtcgataatttctgacgttaagttacacaaaatggttttattgacaggttcgactggccatggatacatggcgccag |
4903512 |
T |
|
| Q |
101 |
agtgtgtccgaaccaatacattcacagataaatgtgatgtttattcttttggtatggttctaattgaagtagcaggcacaaattataagaatactatctt |
200 |
Q |
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| T |
4903511 |
agtgtgtccgaaccaatacattcacagataaatgtgatgtttattcttttggtatggttctaattgaagtagcaggcacaaattataagaatactatctt |
4903412 |
T |
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| Q |
201 |
tgataagatggtcatgttagagaacaaagatcggtttttagaaaagtcatcgaatccagctaactttctggagaggt |
277 |
Q |
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| T |
4903411 |
tgataagatggtcatgttagagaacaaagatcggtttttagaaaagtcatcgaatccagctaactttttggagaggt |
4903335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 88 - 277
Target Start/End: Complemental strand, 4906901 - 4906712
Alignment:
| Q |
88 |
tacatggcgccagagtgtgtccgaaccaatacattcacagataaatgtgatgtttattcttttggtatggttctaattgaagtagcaggcacaaattata |
187 |
Q |
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| T |
4906901 |
tacatggcagcaaagtatgtcctaaccaacactttcacagataaatctgacgtttactcctttggtatggttctacttcaagtagcatgcacaaattaca |
4906802 |
T |
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| Q |
188 |
agaatactatctttgataagatggtcatgttagagaacaaagatcggtttttagaaaagtcatcgaatccagctaactttctggagaggt |
277 |
Q |
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| T |
4906801 |
agaataccatcttcgataagatgatcatgttagatgacacatattggttttcagaaaagtcatttaatccagctaactttttggagaggt |
4906712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 5822739 - 5822861
Alignment:
| Q |
88 |
tacatggcgccagagtgtgtccgaaccaatacattcacagataaatgtgatgtttattcttttggtatggttctaattgaagtagcaggcacaaattata |
187 |
Q |
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|||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |||||| || | | ||||| || | |
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| T |
5822739 |
tacatggcaccagagtatgtccgaaccaatactttcacagataaatgtgatgtttactcctttggtatggttctacttgaagcagtatgtacaaactaca |
5822838 |
T |
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| Q |
188 |
agaatactatctttgataagatg |
210 |
Q |
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| |||| ||||||||||||||| |
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| T |
5822839 |
aatataccatctttgataagatg |
5822861 |
T |
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