View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17532_low_27 (Length: 207)

Name: NF17532_low_27
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17532_low_27
NF17532_low_27
[»] chr2 (24 HSPs)
chr2 (1-204)||(30732034-30732237)
chr2 (1-192)||(30734014-30734205)
chr2 (1-175)||(32918106-32918280)
chr2 (1-84)||(2841015-2841098)
chr2 (1-84)||(43850075-43850158)
chr2 (1-82)||(10763878-10763959)
chr2 (1-193)||(9020873-9021065)
chr2 (1-84)||(9026812-9026896)
chr2 (1-82)||(8973338-8973420)
chr2 (1-84)||(9008047-9008131)
chr2 (1-84)||(9030424-9030507)
chr2 (1-48)||(9032079-9032126)
chr2 (1-84)||(19232398-19232480)
chr2 (3-84)||(17225661-17225743)
chr2 (6-82)||(6471709-6471785)
chr2 (1-84)||(8988481-8988565)
chr2 (1-84)||(8992174-8992258)
chr2 (1-56)||(9023473-9023528)
chr2 (6-84)||(17275862-17275940)
chr2 (1-42)||(8979348-8979389)
chr2 (1-84)||(9016519-9016606)
chr2 (1-84)||(35701915-35701998)
chr2 (1-42)||(8984719-8984760)
chr2 (136-192)||(8992294-8992349)
[»] chr1 (22 HSPs)
chr1 (1-204)||(14669587-14669790)
chr1 (1-204)||(14706114-14706317)
chr1 (1-183)||(14708604-14708786)
chr1 (1-204)||(14683776-14683979)
chr1 (1-201)||(14654222-14654421)
chr1 (1-201)||(14664013-14664212)
chr1 (1-201)||(14652551-14652752)
chr1 (1-201)||(14662342-14662543)
chr1 (1-184)||(14716317-14716500)
chr1 (1-170)||(14681625-14681794)
chr1 (1-170)||(14674507-14674676)
chr1 (1-175)||(14679885-14680059)
chr1 (1-84)||(38175528-38175611)
chr1 (1-70)||(14676658-14676727)
chr1 (1-81)||(14667112-14667192)
chr1 (1-82)||(33988096-33988177)
chr1 (1-184)||(28366097-28366280)
chr1 (1-82)||(11872481-11872562)
chr1 (116-192)||(14667007-14667083)
chr1 (1-53)||(37422195-37422247)
chr1 (28-75)||(14703133-14703180)
chr1 (23-84)||(7448425-7448486)
[»] chr8 (12 HSPs)
chr8 (1-184)||(10944297-10944480)
chr8 (1-171)||(41841064-41841233)
chr8 (1-175)||(40054338-40054512)
chr8 (1-174)||(37679781-37679953)
chr8 (1-84)||(44879009-44879092)
chr8 (1-84)||(44880829-44880912)
chr8 (1-74)||(37682083-37682156)
chr8 (1-84)||(44582879-44582962)
chr8 (1-75)||(42555090-42555164)
chr8 (28-81)||(44583110-44583162)
chr8 (1-48)||(42220880-42220926)
chr8 (6-48)||(42092051-42092093)
[»] chr5 (9 HSPs)
chr5 (1-192)||(7524994-7525185)
chr5 (1-82)||(3643666-3643747)
chr5 (1-82)||(1716451-1716533)
chr5 (1-82)||(4103271-4103352)
chr5 (8-74)||(5350672-5350738)
chr5 (1-84)||(16037884-16037966)
chr5 (104-175)||(3643769-3643839)
chr5 (28-75)||(13636365-13636412)
chr5 (1-46)||(19261152-19261197)
[»] chr4 (14 HSPs)
chr4 (1-175)||(11652300-11652473)
chr4 (1-82)||(26998740-26998821)
chr4 (1-81)||(26984668-26984748)
chr4 (1-84)||(49106527-49106610)
chr4 (1-84)||(50077197-50077280)
chr4 (1-84)||(49108631-49108714)
chr4 (1-82)||(3461142-3461223)
chr4 (3-84)||(21503706-21503787)
chr4 (1-84)||(48205857-48205940)
chr4 (1-80)||(41013548-41013627)
chr4 (11-84)||(35806165-35806238)
chr4 (2-81)||(51578274-51578352)
chr4 (39-82)||(54677590-54677633)
chr4 (32-82)||(34481105-34481155)
[»] chr6 (8 HSPs)
chr6 (1-130)||(10795842-10795971)
chr6 (1-130)||(10791604-10791733)
chr6 (28-173)||(13136607-13136752)
chr6 (1-84)||(30521268-30521351)
chr6 (18-84)||(11333273-11333339)
chr6 (1-75)||(8875715-8875789)
chr6 (103-176)||(10509479-10509552)
chr6 (1-81)||(21216051-21216131)
[»] chr7 (2 HSPs)
chr7 (1-84)||(27134537-27134620)
chr7 (1-74)||(8128169-8128241)
[»] scaffold0549 (1 HSPs)
scaffold0549 (26-84)||(5447-5505)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 30732034 - 30732237
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  30732034 agatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaattacttttttgagggggggaggccactt 30732133  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagtttaaatttttattctggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  30732134 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggtgcaccccaccaattcaagtttaaatttttattctggt 30732233  T
Q  201 tcat 204  Q
    ||||    
T  30732234 tcat 30732237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 30734014 - 30734205
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |       | |||| ||    
T  30734014 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattactttttttagggggagaagccattt 30734113  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagtttaaattttt 192  Q
    | ||||||||||||||||||||||| |||| | || || |||||||||| |||||||  ||||||||||||||||  |||||| ||||||||    
T  30734114 tagtagcttgctactaggcttctcgagtgtcgccagtgcgttgcactattgcattggcttggcgcaccccaccaatccaagttcaaattttt 30734205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 32918106 - 32918280
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       | |||| |     
T  32918106 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagggggagaagccattg 32918205  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaa 175  Q
      |||||||||||||  ||||||| ||||| |  |||| |||||||||||||||| || ||||||||| ||||||    
T  32918206 cagtagcttgctactctgcttctcttgtgtcgctaatgcgttgcactatagcattagtttggcgcacctcaccaa 32918280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2841098 - 2841015
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  2841098 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcacacgatattaaattacttttttga 2841015  T

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Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 43850075 - 43850158
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||||||| ||||||||||    
T  43850075 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatgatattaaatcacttttttga 43850158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 10763959 - 10763878
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattactttttt 82  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||||    
T  10763959 agatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtccatacaatattaaattactttttt 10763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 9020873 - 9021065
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttgannnnnnnaggccact 99  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||| ||||||| |||| ||  |||||||||||||||||||       |||||| |    
T  9020873 agatcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgggtcactacagtattaaattacttttttgagggtgagaggccatt 9020972  T
Q  100 ttggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagtttaaattttta 193  Q
    |   || ||||||| | ||||||||  ||||   | |||||||||||||| |||| ||| ||| |||||||||||| ||||||| |||||||||    
T  9020973 tcaataacttgctattgggcttctcaagtgtcacctatgtgttgcactattgcataggt-tggtgcaccccaccaattcaagttcaaattttta 9021065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 9026812 - 9026896
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttga 84  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||| ||||||| |||| ||  |||||||||||||||||||    
T  9026812 agatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcacaacagtattaaattacttttttga 9026896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 8973338 - 8973420
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-acgatattaaattactttttt 82  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||| ||||||| |||| || ||||||||||||||||||    
T  8973338 agatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgggtcacaacaatattaaattactttttt 8973420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 9008047 - 9008131
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttca-cacgatattaaattacttttttga 84  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||| ||||||| |||  ||  |||||||||||||||||||    
T  9008047 agatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcataacagtattaaattacttttttga 9008131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 9030424 - 9030507
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    |||||||||||||||||||||||||||| |||||||| ||| | ||||  |||||| ||||||  |||||||||||||||||||    
T  9030424 agatcaagtgtagtatctgttcttatcaatttaatatttgagaagtggctcaatgggtcacacagtattaaattacttttttga 9030507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9032079 - 9032126
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9032079 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 9032126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 19232480 - 19232398
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||  ||| ||| |||||| |||||||||||| |||||||    
T  19232480 agatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatattaaattacctttttga 19232398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 17225743 - 17225661
Alignment:
Q  3 atcaagtgtagtatctgttctt-atcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    ||||||||||||||||||| || ||| |||||||| ||||||| ||| ||||||  ||| |||||||||||||||||||||||    
T  17225743 atcaagtgtagtatctgttttttatcggtttaataactgatatctggtccaatgaatcatacgatattaaattacttttttga 17225661  T

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Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 6471785 - 6471709
Alignment:
Q  6 aagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattactttttt 82  Q
    ||||||||||| ||||||||| |||||||||||||||||  || | ||||| ||||| |||||||| ||||||||||    
T  6471785 aagtgtagtatatgttcttattagtttaatatctgatatacggtctaatggatcacatgatattaagttactttttt 6471709  T

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Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 8988481 - 8988565
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttga 84  Q
    |||||||||||||||| |||||||||||||||||||| ||||  |||   ||||||||| | || ||||||||||||||||||||    
T  8988481 agatcaagtgtagtatttgttcttatcagtttaatatttgatcagtgactcaatggttctcaacaatattaaattacttttttga 8988565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 8992174 - 8992258
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttga 84  Q
    |||||||||||||||| ||||||||| |||| ||||||||||  |||| ||||||| |||| |  ||||||||||||||||||||    
T  8992174 agatcaagtgtagtatatgttcttatgagttcaatatctgattagtggcccaatgggtcacaataatattaaattacttttttga 8992258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 9023473 - 9023528
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatgg 56  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||| |||||||    
T  9023473 agatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgg 9023528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 17275862 - 17275940
Alignment:
Q  6 aagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    |||||||||||  ||||||||||||| ||| | | |||||||| ||||||| |||||||||||| |||||| |||||||    
T  17275862 aagtgtagtatacgttcttatcagttcaatctttaatatgtggtccaatggatcacacgatattgaattacatttttga 17275940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8979348 - 8979389
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgat 42  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  8979348 agatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 9016519 - 9016606
Alignment:
Q  1 agatcaagtgtagtatctgttcttatc---agtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttga 84  Q
    ||||||| |||||||||||||||||||   |||||||||||||||  |||| ||||||| |||| ||  |||||||||||||||||||    
T  9016519 agatcaaatgtagtatctgttcttatcagtagtttaatatctgattagtggcccaatgggtcacaacagtattaaattacttttttga 9016606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 35701915 - 35701998
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    ||||||||||| |||| |||| |||| |||||||||| |||||||||| ||||    |||||||||||||  ||||||||||||    
T  35701915 agatcaagtgtggtatttgtttttattagtttaatatttgatatgtgggccaacaagtcacacgatattagtttacttttttga 35701998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8984719 - 8984760
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgat 42  Q
    |||||||||||||||| ||||||||| |||||||||| ||||    
T  8984719 agatcaagtgtagtatttgttcttattagtttaatatttgat 8984760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 8992294 - 8992349
Alignment:
Q  136 atgtgttgcactatagcattggtctggcgcaccccaccaaatcaagtttaaattttt 192  Q
    |||||||||||||| |||| || |||||||||||| |||| ||||||| ||||||||    
T  8992294 atgtgttgcactattgcatggg-ctggcgcacccctccaattcaagttcaaattttt 8992349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 14669790 - 14669587
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||    
T  14669790 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggagaggcaactt 14669691  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagtttaaatttttattctggt 200  Q
    | ||||||||||||||  | ||| |||||| | ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  14669690 tagtagcttgctactaatcctcttgtgtgtcgccaatgtgttgcactatagcattggtctggtgcaccccaccaattcaagtttaaatttttattctggt 14669591  T
Q  201 tcat 204  Q
    ||||    
T  14669590 tcat 14669587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 14706114 - 14706317
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||    
T  14706114 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggagaggcaactt 14706213  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagtttaaatttttattctggt 200  Q
    | ||||||||||||||  | ||| |||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14706214 tagtagcttgctactaatcctcttgtgtgttgactatgtgttgcactataacattggtctggcgcaccccaccaattcaagtttaaatttttattctggt 14706313  T
Q  201 tcat 204  Q
    ||||    
T  14706314 tcat 14706317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 14708604 - 14708786
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| |||||    
T  14708604 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggagaggtcactt 14708703  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagtt 183  Q
    | ||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||    
T  14708704 tagtagcttgctattaggcttctcttgtgtcgtcaatgtgttgcactacagcattggcctggcgcaccccaccaattcaagtt 14708786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 14683776 - 14683979
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||    
T  14683776 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggagaggcaactt 14683875  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagtttaaatttttattctggt 200  Q
    | ||||||||||||||| | ||||||||||   ||||||||||||||||||||||||  ||| ||||||||||||  |||  ||||||||||||||||||    
T  14683876 tagtagcttgctactagtcctctcgtgtgtcaccaatgtgttgcactatagcattggcttggtgcaccccaccaatccaaagttaaatttttattctggt 14683975  T
Q  201 tcat 204  Q
    ||||    
T  14683976 tcat 14683979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 14654421 - 14654222
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  14654421 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggagaggccactt 14654322  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagtttaaatttttattctggt 200  Q
      |||||||||||| || | |||||||||| | |||| |||||||||||||||||||  |||| ||||||||||| ||||| ||||||||||||||||||    
T  14654321 cagtagcttgctacgagtcctctcgtgtgtcgccaatatgttgcactatagcattggcttggctcaccccaccaattcaag-ttaaatttttattctggt 14654223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 14664212 - 14664013
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  14664212 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggagaggccactt 14664113  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagtttaaatttttattctggt 200  Q
      |||||||||||| || | |||||||||| | |||| |||||||||||||||||||  |||| ||||||||||| ||||| ||||||||||||||||||    
T  14664112 cagtagcttgctacgagtcctctcgtgtgtcgccaatatgttgcactatagcattggcttggctcaccccaccaattcaag-ttaaatttttattctggt 14664014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 14652551 - 14652752
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       | |||| ||    
T  14652551 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagggggagaagccattt 14652650  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagtttaaat-ttttattctgg 199  Q
    | ||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||  |||||||||||||||| ||||||| |||| ||||||| |||    
T  14652651 tagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcaccccaccaattcaagttcaaatattttattttgg 14652750  T
Q  200 tt 201  Q
    ||    
T  14652751 tt 14652752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 14662342 - 14662543
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       | |||| ||    
T  14662342 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagggggagaagccattt 14662441  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagtttaaat-ttttattctgg 199  Q
    | ||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||  |||||||||||||||| ||||||| |||| ||||||| |||    
T  14662442 tagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcaccccaccaattcaagttcaaatattttattttgg 14662541  T
Q  200 tt 201  Q
    ||    
T  14662542 tt 14662543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 14716317 - 14716500
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       |||| ||||    
T  14716317 agatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaattacttttttgagggggagaggcaactt 14716416  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagttt 184  Q
    | ||||||||||||||  | |||||||||| | ||||||||||||||||||||||||  ||| |||||||||||| ||||||||    
T  14716417 tagtagcttgctactaatcctctcgtgtgtcgccaatgtgttgcactatagcattggcttggtgcaccccaccaattcaagttt 14716500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 14681625 - 14681794
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | |||| ||    
T  14681625 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggagaagccattt 14681724  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcacccc 170  Q
    | ||||||||||||||||||||||| ||||   |||||| |||||||||||||||||| |||| ||||||    
T  14681725 tagtagcttgctactaggcttctcgggtgtcaacaatgtattgcactatagcattggtttggcacacccc 14681794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 14674507 - 14674676
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       | |||| ||    
T  14674507 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattacttttttgagggggagaagccattt 14674606  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcacccc 170  Q
    | ||||||||||||||||||||||| ||||   |||||| |||||||||||||||||| |||| ||||||    
T  14674607 tagtagcttgctactaggcttctcgggtgtcaacaatgtattgcactatagcattggtttggcacacccc 14674676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 14679885 - 14680059
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       | ||||  |    
T  14679885 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattacttttttgagggggagaagccatat 14679984  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaa 175  Q
    | ||||||||||||||||||||| | |||||| ||||| ||||||||| ||||||||  |||||||||| |||||    
T  14679985 tagtagcttgctactaggcttcttgagtgttgccaatgcgttgcactacagcattggcttggcgcacccgaccaa 14680059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 38175611 - 38175528
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||    
T  38175611 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacgatattaaattacttttttga 38175528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 14676658 - 14676727
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatatta 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676658 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatatta 14676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 14667192 - 14667112
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 81  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  14667192 agatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatattaaattacttttt 14667112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 33988096 - 33988177
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattactttttt 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||||||||||||||||||||||    
T  33988096 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacgatattaaattactttttt 33988177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 28366280 - 28366097
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg-gaccaatggttcacacgatattaaattacttttttgannnnnnnaggccact 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||||| |       || | | |    
T  28366280 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaccccaatgggtcacacgatattaaattacttttttaagggggagagactatt 28366181  T
Q  100 ttggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagttt 184  Q
     | ||||||||||||||||  | || ||||| ||  ||| |||||||||| ||||||| |||||||| |||||||| | ||||||    
T  28366180 atagtagcttgctactaggtctttcatgtgtcgtttatgcgttgcactattgcattgg-ctggcgcatcccaccaattaaagttt 28366097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 11872562 - 11872481
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattactttttt 82  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||  |||||| |||||||||||||||||||||||||    
T  11872562 agatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaattactttttt 11872481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 14667083 - 14667007
Alignment:
Q  116 aggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagtttaaattttt 192  Q
    |||||||||| |||||| || |||||||||||||||||||||  ||||||||||||||||  |||| | ||||||||    
T  14667083 aggcttctcgagtgttgccagtgtgttgcactatagcattggcttggcgcaccccaccaatccaagctcaaattttt 14667007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 37422195 - 37422247
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaa 53  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||| ||||    
T  37422195 agatcaagtgtagcatatgttcttatcagtttaatatctgatatgtggtccaa 37422247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 14703133 - 14703180
Alignment:
Q  28 agtttaatatctgatatgtggaccaatggttcacacgatattaaatta 75  Q
    |||||||||| |||||||||||||||| || |||||||||||||||||    
T  14703133 agtttaatatttgatatgtggaccaatagtccacacgatattaaatta 14703180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 7448486 - 7448425
Alignment:
Q  23 ttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    |||| ||||||||||||||||||||| | ||||  | | |||||||| ||||||||||||||    
T  7448486 ttattagtttaatatctgatatgtggtcaaatgaattatacgatattgaattacttttttga 7448425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 10944480 - 10944297
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||       | |||| ||    
T  10944480 agatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatattaaattacttttttgatggggagaagccattt 10944381  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagttt 184  Q
    | ||||||||||||||||||||| | ||||    | || ||||||||||||||||||| |||||||||||||||| ||||||||    
T  10944380 tagtagcttgctactaggcttcttgagtgtcactattgcgttgcactatagcattggtttggcgcaccccaccaattcaagttt 10944297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 41841233 - 41841064
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||       | |||||      
T  41841233 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatgggtcacacgatattaaattacttttttgatggggagaagccaccc 41841134  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcacccca 171  Q
       |||||||||| | ||||||||| |||| | | |||||||||||||| ||| ||| |||||||||||||    
T  41841133 caatagcttgctattgggcttctcgagtgtcgcctatgtgttgcactattgca-tgggctggcgcacccca 41841064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 40054338 - 40054512
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||       |||||||||    
T  40054338 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgatattaaattacttttttgagggggagaggccactt 40054437  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaa 175  Q
       |||||||||| | |||||||   |||| |   |||||||||||||| ||||  |  ||||||||||||||||    
T  40054438 caatagcttgctattgggcttcttaagtgtcgcttatgtgttgcactattgcataagcttggcgcaccccaccaa 40054512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 37679781 - 37679953
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||  ||| ||||       |||||||      
T  37679781 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttgatattaaatttatttattgagggggagaggccacca 37679880  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccacca 174  Q
     |||||||||||| | ||| |||| ||||| | |  ||||||||||||||||| ||||||||||||||||||||    
T  37679881 cggtagcttgctattgggcctctc-tgtgtcgcctttgtgttgcactatagcaatggtctggcgcaccccacca 37679953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 44879009 - 44879092
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||| |||||||||||||||||||||    
T  44879009 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaattacttttttga 44879092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 44880912 - 44880829
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||| |||||||||||||||||||||    
T  44880912 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaattacttttttga 44880829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37682083 - 37682156
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  37682083 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 37682156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 44582879 - 44582962
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |  |||||| |   | |||||||||||||||||||||    
T  44582879 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtagctcaatggattctatgatattaaattacttttttga 44582962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42555164 - 42555090
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 75  Q
    |||||||||| || ||||||| ||||||||||||||| ||||||||||  |||||  ||||||||||||||||||    
T  42555164 agatcaagtgcagaatctgtttttatcagtttaatatttgatatgtggttcaatgaatcacacgatattaaatta 42555090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 44583110 - 44583162
Alignment:
Q  28 agtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 81  Q
    |||||||||||||||||||| || |||||| |||||||||||||||||||||||    
T  44583110 agtttaatatctgatatgtgaac-aatggtacacacgatattaaattacttttt 44583162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42220926 - 42220880
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 48  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||    
T  42220926 agatcaagtgtagtatct-ttcttattagtttaatatctgatatgtgg 42220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 42092051 - 42092093
Alignment:
Q  6 aagtgtagtatctgttcttatcagtttaatatctgatatgtgg 48  Q
    ||||||| ||| |||||||||||||||||||||||||||||||    
T  42092051 aagtgtaatatttgttcttatcagtttaatatctgatatgtgg 42092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 7524994 - 7525185
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||       ||||| | |    
T  7524994 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgatattaaattacttttttgagggggagaggccgcct 7525093  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaatcaagtttaaattttt 192  Q
    | |||||||||| || || ||||| ||||| ||| ||| |||||||||| |||| ||   ||||||||||||||| |  ||||||| |||||    
T  7525094 tagtagcttgctgctgggtttctcatgtgtcgtccatgcgttgcactattgcatgggctaggcgcaccccaccaattttagtttaatttttt 7525185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 3643666 - 3643747
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattactttttt 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  3643666 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccattgggtcacacgatattaaattactttttt 3643747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 1716533 - 1716451
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggacc-aatggttcacacgatattaaattactttttt 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  1716533 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcacacgatattaaattactttttt 1716451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 4103271 - 4103352
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattactttttt 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||||||    
T  4103271 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccacacgatattaaattgctttttt 4103352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 5350672 - 5350738
Alignment:
Q  8 gtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 74  Q
    ||||||||||| || ||||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  5350672 gtgtagtatctattgttatcagtttaatatctgatatgtgggacaatggtccacacgatattaaatt 5350738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 16037884 - 16037966
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    |||||||||||||||| ||||||||| |  ||||||| ||||| |||| | ||||| ||| |||||||||||||||||||||||    
T  16037884 agatcaagtgtagtatttgttcttattatcttaatatttgata-gtggtctaatgggtcaaacgatattaaattacttttttga 16037966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 3643769 - 3643839
Alignment:
Q  104 tagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaa 175  Q
    |||||||||| | || |||||| ||||||   |||||||||||||| ||||||| |||||||||||||||||    
T  3643769 tagcttgctattgggtttctcgagtgttgcttatgtgttgcactattgcattgg-ctggcgcaccccaccaa 3643839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 13636365 - 13636412
Alignment:
Q  28 agtttaatatctgatatgtggaccaatggttcacacgatattaaatta 75  Q
    |||||||||||||||||||||| ||| ||| |||||| ||||||||||    
T  13636365 agtttaatatctgatatgtggatcaacggtccacacggtattaaatta 13636412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19261197 - 19261152
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 46  Q
    |||||||||||| ||| |||||||||| ||| ||||||||||||||    
T  19261197 agatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 11652473 - 11652300
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||       | ||||||     
T  11652473 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcacacgatattaaattatttttttgagggggagaagccactc 11652374  T
Q  101 tggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaa 175  Q
       |||||||||| | ||||||| | |||| | | |||||||||||||| ||| ||| |||||||||||||||||    
T  11652373 caatagcttgctattgggcttcttgagtgtcgcctatgtgttgcactattgca-tgggctggcgcaccccaccaa 11652300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 26998821 - 26998740
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattactttttt 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26998821 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattactttttt 26998740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 26984748 - 26984668
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26984748 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttt 26984668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 49106610 - 49106527
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  49106610 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttttga 49106527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 50077280 - 50077197
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  50077280 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatgatattaaattacttttttga 50077197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 49108714 - 49108631
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||||||||||||||||||    
T  49108714 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaattacttttttga 49108631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 3461223 - 3461142
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattactttttt 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||||||||||||||||    
T  3461223 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaattactttttt 3461142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 21503706 - 21503787
Alignment:
Q  3 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| | |||||||||||||||||| ||||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaattatttttttga 21503787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 48205857 - 48205940
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    |||| ||||||||||||||||||||| | |||||||||| |||||||||||| ||||| ||| |||||||||||||||||||||    
T  48205857 agattaagtgtagtatctgttcttattaatttaatatcttatatgtggaccattggtttacatgatattaaattacttttttga 48205940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 41013627 - 41013548
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattactttt 80  Q
    |||| |||| || ||| |||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||| ||||    
T  41013627 agattaagtataatatatgttcttatccgtttaatatctgatatgtggaccaagggttcacatggtattaaattattttt 41013548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 35806165 - 35806238
Alignment:
Q  11 tagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    |||||| |||||||||||||||||||| ||||||||   | ||||  || ||||||||||||||||||||||||    
T  35806165 tagtatttgttcttatcagtttaatatatgatatgtaatctaatgagtcgcacgatattaaattacttttttga 35806238  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 51578274 - 51578352
Alignment:
Q  2 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 81  Q
    ||||||||||| ||| ||||||||| |||| | ||||| |||| |||  |||| | ||||||||||||||||||||||||    
T  51578274 gatcaagtgtaatatatgttcttattagttca-tatctaatatatggttcaatagatcacacgatattaaattacttttt 51578352  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 54677590 - 54677633
Alignment:
Q  39 tgatatgtggaccaatggttcacacgatattaaattactttttt 82  Q
    |||||||||| | ||||| |||||||||||||||||||||||||    
T  54677590 tgatatgtggtctaatggatcacacgatattaaattactttttt 54677633  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 34481155 - 34481105
Alignment:
Q  32 taatatctgatatgtggaccaatggttcacacgatattaaattactttttt 82  Q
    |||||||||||||||| | ||||| | |||| |||||||||||||||||||    
T  34481155 taatatctgatatgtgaatcaatgatccacaagatattaaattactttttt 34481105  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 10795971 - 10795842
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||       | |||||||    
T  10795971 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcacacgatattaaattacttttttgagggggagaagccactt 10795872  T
Q  101 tggtagcttgctactaggcttctcgtgtgt 130  Q
       |||||||||| |||||||||| |||||    
T  10795871 caatagcttgctattaggcttctcatgtgt 10795842  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 10791733 - 10791604
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||| |||||||||||||||||||||       | |||||||    
T  10791733 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatgatattaaattacttttttgagggggagaagccactt 10791634  T
Q  101 tggtagcttgctactaggcttctcgtgtgt 130  Q
       |||||||||| |||||||||| |||||    
T  10791633 caatagcttgctattaggcttctcatgtgt 10791604  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 13136607 - 13136752
Alignment:
Q  28 agtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgannnnnnnaggccactttggtagcttgctactaggcttctcgtg 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||         |||| |   |||||||||||||  ||||||| ||    
T  13136607 agtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagagggaggagccattgcagtagcttgctactctgcttctcttg 13136706  T
Q  128 tgttgtcaatgtgttgcactatagcattggtctggcgcaccccacc 173  Q
    ||| |  |||| |||||||||||||||| || ||||||||||||||    
T  13136707 tgtcgctaatgcgttgcactatagcattagtttggcgcaccccacc 13136752  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 30521268 - 30521351
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||| ||||  ||||||||    
T  30521268 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcacacgatattcaatttattttttga 30521351  T

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Target: chr6; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 11333273 - 11333339
Alignment:
Q  18 tgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||    
T  11333273 tgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaattacttttttga 11333339  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 8875715 - 8875789
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 75  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| | | ||||||||||||||||    
T  8875715 agatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaatta 8875789  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 10509479 - 10509552
Alignment:
Q  103 gtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggcgcaccccaccaaa 176  Q
    ||||||||||||| ||||||| |||||| |  |||| ||||||||||||||||||  ||| |||||||||||||    
T  10509479 gtagcttgctactcggcttcttgtgtgtcgctaatgcgttgcactatagcattggcttggagcaccccaccaaa 10509552  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 21216051 - 21216131
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 81  Q
    |||||| || ||| |||| |||||||||||||||||||| ||||||||  |||||  |||||  |||||||||||||||||    
T  21216051 agatcatgtatagcatctattcttatcagtttaatatcttatatgtggctcaatgaatcacaaaatattaaattacttttt 21216131  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 27134537 - 27134620
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    ||||||| | ||||||||||||||||  |||||||||||||||||||| | ||||  ||| |||||||||||||||||||||||    
T  27134537 agatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtcaaacgatattaaattacttttttga 27134620  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8128169 - 8128241
Alignment:
Q  1 agatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 74  Q
    |||| ||||||||||| ||||||| | |||||||||| |||||||||| ||||||| |||||| ||||||||||    
T  8128169 agattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaatgg-tcacacaatattaaatt 8128241  T

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Target: scaffold0549 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 5447 - 5505
Alignment:
Q  26 tcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 84  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||  ||||||||    
T  5447 tcagtttaatatctgatatatgggccaattgttcacacgatattaaatttattttttga 5505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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