View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17532_low_5 (Length: 495)
Name: NF17532_low_5
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17532_low_5 |
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| [»] scaffold0620 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 71 - 481
Target Start/End: Original strand, 32876275 - 32876685
Alignment:
| Q |
71 |
tattatacacgtggaacatccaaaatgaaatcataacaacactaatacaaacatcacttaaattgagaattaccaccaataccaataagaaacctaacta |
170 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32876275 |
tattatataggtggaacatccaaaatgaaatcataacaacactaatacaaacatcacttaaattgagaattaccaccaataccaataagaaacctaacta |
32876374 |
T |
|
| Q |
171 |
ccaaaatcaaaggcaatacctaaaaacaaacccaaactcccacacttcctcatgagtggctatagaaacaaaattcaatcacctatcgaatgctaccata |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32876375 |
ccaaaatcaaaggcaatacctaaaaacaaacccaaactcccacacttcctcatgagtggctatagaaacaaaattcaatcacctatcgaatgctaccata |
32876474 |
T |
|
| Q |
271 |
acccctccaataaaataaaacccttgaaaacagaagcttaacttcgcatcaccacaactaagcccaattaaataccagaccaatgacttattccaacacg |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
32876475 |
acccctccaataaaataaaacccttgaaaacagaagcttaacttcgcatcaccacaactaagcccaattaaacactagaccaatgacttattccaacacg |
32876574 |
T |
|
| Q |
371 |
ctttcagattccaccaccgctcgttctctgatccgtcaaagaagacacccttacaagcccaaaaatttaggtcaataaagtgactcccgatctcgaatca |
470 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32876575 |
ctttcagattccaccaccgctcgttctctgatccgccaaagaagacacccttacaagcccaaaaatttaggtcaagaaagtgactcccgatctcgaatca |
32876674 |
T |
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| Q |
471 |
aaagtcgtcga |
481 |
Q |
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| T |
32876675 |
aaagtcgtcga |
32876685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 32877211 - 32877183
Alignment:
| Q |
18 |
catgtcttgctctacaaatacatcggtct |
46 |
Q |
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| T |
32877211 |
catgtcttgctctacaaatacatcggtct |
32877183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 27044096 - 27044025
Alignment:
| Q |
103 |
ataacaacactaatacaaacatcacttaaattgagaattaccaccaataccaataagaaacctaactaccaa |
174 |
Q |
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| T |
27044096 |
ataataacagtaattcaaacaccacctaaattgagagctaccaccaaccccaataagaaacctaactaccaa |
27044025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 15676745 - 15676820
Alignment:
| Q |
318 |
atcaccacaactaagcccaattaaataccagaccaatgacttattccaacacgctttcagattccaccaccgctcg |
393 |
Q |
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| T |
15676745 |
atcaccataaatgagcccaattaaatatctgaacaatgacttattccaacattctttcatattccaccaccactcg |
15676820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 475
Target Start/End: Original strand, 28765603 - 28765655
Alignment:
| Q |
423 |
acaagcccaaaaatttaggtcaataaagtgactcccgatctcgaatcaaaagt |
475 |
Q |
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| T |
28765603 |
acaagcccaaaaacttaagtcaagaaactgactctcgatctcgaatcaaaagt |
28765655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 473
Target Start/End: Complemental strand, 3922 - 3860
Alignment:
| Q |
410 |
agaagacacccttacaagcccaaaaatttaggtcaataaagtgactcccgatctcgaatcaaaa |
473 |
Q |
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| T |
3922 |
agaagacaccataacaa-cccaaaaatttgagtcaagaaactgactcccgatctcgaatcaaaa |
3860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 475
Target Start/End: Complemental strand, 34105510 - 34105441
Alignment:
| Q |
404 |
cgtcaaagaagacacccttacaagcccaaaaatttaggtcaataaagtgactcccgatctcgaatcaaaagt |
475 |
Q |
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| T |
34105510 |
cgtcagagaacacaccataacaagcc--aaaatttgagtcaagaaactgactcccgatctcgaatcaaaagt |
34105441 |
T |
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