View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17532_low_8 (Length: 468)
Name: NF17532_low_8
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17532_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 50648429 - 50648875
Alignment:
| Q |
18 |
tcatgcaccagttcgatttaatattggttcagttcatttcagcaattcggttcggttcaacagtgtttttgcccatccctaagcttacagattcgcacac |
117 |
Q |
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| T |
50648429 |
tcatgcaccagttcgatttaatattggttcagttcatttcagcaattcggtttggttcaacagtgtttttgcccatccctaagcttacagattcgcacac |
50648528 |
T |
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| Q |
118 |
ataactagttgtttttagacacctttcattgtttaaccaaagaagagagtctcatttctttctcttctctttctcatcccaaagatacaatcaactttgg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50648529 |
ataactagttgtttttagacacctttcattgtttaaccaaagaagagagtctcatttctttctcttctctttctcatcccaaagatacagtcaactttgg |
50648628 |
T |
|
| Q |
218 |
gtaaccataatttgttatttttgttaaaatcaaatttgactggatnnnnnnnntgcgtggatggctcaaatcctcccaagctccccgtgcagtaaatttt |
317 |
Q |
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| T |
50648629 |
gtaaccataatttgttatttttgttaaaatcaaatttgactggataaaaaaaatgcgtggatggctcaaatcctcccaagctccccgtgcagtaaatttt |
50648728 |
T |
|
| Q |
318 |
aaaacatacgacatagaccacatattcattcaagagccaagaaatttgttaaaaaggacttccgaagtttcttacaaagattggaagggaagattattaa |
417 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
50648729 |
aaaacagacgacatagaccacatattcattcaagagccaagaaatttgttaaaaaggacttgcgaagtttcttacaaagattggaagggaagattattaa |
50648828 |
T |
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| Q |
418 |
aatattttagacgcaaaagaaccaaatgtttatgaaa-caaattttc |
463 |
Q |
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| T |
50648829 |
aatattttagacgcaaaagaaccagatgtttatgaaaccaaattttc |
50648875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 50642745 - 50642805
Alignment:
| Q |
345 |
attcaagagccaagaaatttgttaaaaaggacttccgaagtttcttacaaagattggaagg |
405 |
Q |
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|||||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
50642745 |
attcaatagccaataaatttgttaaaaaggactagcaaagtttcttacaaagattggaagg |
50642805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 23777358 - 23777391
Alignment:
| Q |
41 |
ttggttcagttcatttcagcaattcggttcggtt |
74 |
Q |
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| T |
23777358 |
ttggttcagttcatttcagcaattcagttcggtt |
23777391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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