View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17532_low_9 (Length: 451)
Name: NF17532_low_9
Description: NF17532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17532_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Complemental strand, 36149400 - 36148983
Alignment:
| Q |
19 |
gaacactctcctaatcaaggacaagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcatgaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149400 |
gaacactctcctaatcaaggacaagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcatgaag |
36149301 |
T |
|
| Q |
119 |
ttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatcatatgaacg |
218 |
Q |
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| T |
36149300 |
ttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatcatatgaacg |
36149201 |
T |
|
| Q |
219 |
tttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatccaaccctagcaccaggtcacttgacccgtttacgt |
318 |
Q |
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| T |
36149200 |
tttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatccaaccctagcaccaggtcacttgacccgtttacgt |
36149101 |
T |
|
| Q |
319 |
gctgcaaatgtcgacactgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggagaccaagtaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149100 |
gctgcaaatgtcgacactgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggagaccaagtaa |
36149001 |
T |
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| Q |
419 |
gttctatctctctcatat |
436 |
Q |
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| T |
36149000 |
gttctatcactctcatat |
36148983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 110 - 430
Target Start/End: Complemental strand, 36083412 - 36083092
Alignment:
| Q |
110 |
tgcatgaagttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatc |
209 |
Q |
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|||||||||| ||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
36083412 |
tgcatgaagtggaagcaattctagaatacgaatttaagaacatactattgctagaagaggctttcactcactgtacttacggtgctgagaatggcttatc |
36083313 |
T |
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| Q |
210 |
atatgaacgtttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatccaaccctagcaccaggtcacttgacc |
309 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| || |||||||||||||||||| |
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| T |
36083312 |
ttatgagcgtttggaatacataggtgattcagttcttaacctaatgataacaacggaacaatttcatgcatatccaacgctggcaccaggtcacttgacc |
36083213 |
T |
|
| Q |
310 |
cgtttacgtgctgcaaatgtcgacactgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggag |
409 |
Q |
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| T |
36083212 |
cgtttacgtgctgcaaatgtcgacactgaaaaacttgcacgtgtagccatcaaatatggtttacatcgttatgtgcgtcacaaaaagccactgcttggag |
36083113 |
T |
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| Q |
410 |
accaagtaagttctatctctc |
430 |
Q |
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|| ||||||||||| |||||| |
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| T |
36083112 |
acgaagtaagttctctctctc |
36083092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 420
Target Start/End: Complemental strand, 36173567 - 36173472
Alignment:
| Q |
325 |
aatgtcgacactgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggagaccaagtaagt |
420 |
Q |
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| T |
36173567 |
aatgtggactctgaaaagctggcacgtgtggctatcaaacatggattggatcgttatttgcgtcacaaaaaacctcaacttggagaggaagtaagt |
36173472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 420
Target Start/End: Complemental strand, 36160257 - 36160161
Alignment:
| Q |
324 |
aaatgtcgacactgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggagaccaagtaagt |
420 |
Q |
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|||||| ||| ||||||| |||||||| ||||| ||||| ||||| ||| ||||||||||||| |||||||| || | ||||||||| ||||||||| |
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| T |
36160257 |
aaatgtggactctgaaaagctggcacgagtggctatcaatcatgggttggatcgttatttgcgtcacaaaaagccacaacttggagagcaagtaagt |
36160161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 41 - 179
Target Start/End: Original strand, 26527625 - 26527763
Alignment:
| Q |
41 |
aagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcatgaagttgaagccattcttgaatacga |
140 |
Q |
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|||||| || |||| |||||||| |||||| |||||| |||||| |||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
26527625 |
aagaagaagaacacatgaaggaaaatgagaatgatgcggagacagaagaaaatgattctccaccaccaccgcatgaagtggaagccattcttgaatacga |
26527724 |
T |
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| Q |
141 |
atttaagaacaaactattactagaagaggctttcactca |
179 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |
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| T |
26527725 |
attcaagaacaaactattactagaagaggctttcactca |
26527763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 410
Target Start/End: Original strand, 10489715 - 10489788
Alignment:
| Q |
337 |
gaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggaga |
410 |
Q |
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|||||||||||||||||||| ||||| ||||| ||| || ||||||||||||||||||| |||| ||||||||| |
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| T |
10489715 |
gaaaaactggcacgtgtggctatcaaacatgggttggatggttatttgcgacacaaaaagcctcaacttggaga |
10489788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 420
Target Start/End: Complemental strand, 17453819 - 17453724
Alignment:
| Q |
325 |
aatgtcgacactgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggagaccaagtaagt |
420 |
Q |
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||||| ||| || |||||| ||||||||||| ||||| ||||| ||| |||||||||||||||||||||||||| ||||| ||| ||||||||| |
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| T |
17453819 |
aatgtggactctaaaaaacacgcacgtgtggctatcaaacatgggttgggtcgttatttgcgacacaaaaaacctcaacttgcagagcaagtaagt |
17453724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 410
Target Start/End: Original strand, 17454712 - 17454787
Alignment:
| Q |
335 |
ctgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggaga |
410 |
Q |
| |
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|||||||||||||| |||| || ||||| ||||| ||| |||||||||||| ||||||||| |||| ||||||||| |
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| T |
17454712 |
ctgaaaaactggcatgtgtagctatcaaacatgggttggatcgttatttgcaacacaaaaagcctcaacttggaga |
17454787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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