View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17533_high_12 (Length: 338)

Name: NF17533_high_12
Description: NF17533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17533_high_12
NF17533_high_12
[»] chr4 (12 HSPs)
chr4 (48-321)||(37826664-37826943)
chr4 (92-283)||(48852836-48853030)
chr4 (48-136)||(7773499-7773587)
chr4 (179-282)||(49043994-49044097)
chr4 (98-136)||(7878045-7878083)
chr4 (50-136)||(45365896-45365982)
chr4 (185-267)||(48705193-48705275)
chr4 (104-216)||(50669301-50669416)
chr4 (176-216)||(48898959-48898999)
chr4 (48-131)||(7237417-7237500)
chr4 (102-203)||(43596153-43596254)
chr4 (48-80)||(7908657-7908689)
[»] chr8 (6 HSPs)
chr8 (100-218)||(12200559-12200677)
chr8 (100-218)||(12444987-12445105)
chr8 (100-218)||(12195541-12195659)
chr8 (100-218)||(12439969-12440087)
chr8 (93-218)||(4962238-4962367)
chr8 (1-218)||(15349100-15349317)
[»] chr3 (4 HSPs)
chr3 (92-218)||(11005640-11005766)
chr3 (93-287)||(11015204-11015398)
chr3 (38-168)||(47451564-47451694)
chr3 (92-283)||(11024215-11024406)
[»] chr5 (1 HSPs)
chr5 (48-129)||(179364-179445)
[»] chr7 (1 HSPs)
chr7 (176-218)||(48884047-48884089)


Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 48 - 321
Target Start/End: Original strand, 37826664 - 37826943
Alignment:
Q  48 tgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaattctccaaatacccacaaaccaaaatatggagg 147  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37826664 tgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaattctccaaatacccacaaaccaaaatatggagg 37826763  T
Q  148 atcatcgtgaaaatcatctgg------aacgggtatctctaacagtttcctttccattaaattaaaggcaacaataagatgcagtggtgaatcacgacga 241  Q
    |||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37826764 atcatcgtgaaaatcatctggaactggaacgggtatctctaacagtttcctttccattaaattaaaggcaacaataagatgcagtggtgaatcacgacga 37826863  T
Q  242 taagttaaccaatgaatggccccatttaagagtgaccctactttggcattataaaagccattcctatatgcggtgtgagt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37826864 taagttaaccaatgaatggccccatttaagagtgaccctactttggcattataaaagccattcctatatgcggtgtgagt 37826943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 283
Target Start/End: Complemental strand, 48853030 - 48852836
Alignment:
Q  92 cccatggcccatagactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcc 191  Q
    |||||| |||||| ||| |||||||||| ||||||||||||| |  |||| | ||| |||| || ||||||||| || |  |  | |||||| |||||||    
T  48853030 cccatgacccatatacttagaaattctctaaatacccacaaatcgcaataggtaggttcatggtaaaaatcatccggcaaagacaactctaaaagtttcc 48852931  T
Q  192 tttccattaaattaaaggcaacaataa---gatgcagtggtgaatcacgacgataagttaaccaatgaatggccccatttaagagtgaccctact 283  Q
    |||||||||||| |||||| |||||||    || || |||| ||||| ||||| |||  ||||||||||| |||||||| || || |||||||||    
T  48852930 tttccattaaatcaaaggccacaataacattattcattggtaaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccctact 48852836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 7773499 - 7773587
Alignment:
Q  48 tgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaattctccaaatacccacaaacca 136  Q
    |||||||||||||||||||||||| || ||||| ||||  | |  || | ||||||| ||||||| |||||||||||||||||||||||    
T  7773499 tgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaatacccacaaacca 7773587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 282
Target Start/End: Original strand, 49043994 - 49044097
Alignment:
Q  179 tctaacagtttcctttccattaaattaaaggcaacaataagatgcagtggtgaatcacgacgataagttaaccaatgaatggccccatttaagagtgacc 278  Q
    ||||| ||||||||||| ||||||| |||||||||||||| || || || | ||||| || || |||  ||||| ||||| |||||||| ||||| ||||    
T  49043994 tctaaaagtttcctttcaattaaatcaaaggcaacaataacattcattgataaatcaagatgaaaagccaaccagtgaatagccccattaaagagcgacc 49044093  T
Q  279 ctac 282  Q
    ||||    
T  49044094 ctac 49044097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 7878083 - 7878045
Alignment:
Q  98 gcccatagactaagaaattctccaaatacccacaaacca 136  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  7878083 gcccatagactgagaaattctccaaatacccacaaacca 7878045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 45365896 - 45365982
Alignment:
Q  50 tattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaattctccaaatacccacaaacca 136  Q
    |||||||||||||||||||||| || ||||| ||||| |    |||| ||||| | ||| | |||||||||||||||||||||||||    
T  45365896 tattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaatacccacaaacca 45365982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 48705193 - 48705275
Alignment:
Q  185 agtttcctttccattaaattaaaggcaacaataagatgcagtggtgaatcacgacgataagttaaccaatgaatggccccatt 267  Q
    |||| |||||||||||||| |||||||||||||| || |  | || ||||| |||||||||  ||||||||||| ||||||||    
T  48705193 agttccctttccattaaatcaaaggcaacaataacatcctttcgtaaatcatgacgataagccaaccaatgaatagccccatt 48705275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 50669416 - 50669301
Alignment:
Q  104 agactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgg---gtatctctaacagtttcctttccatta 200  Q
    ||||| ||||||||||||||||||||||||||| ||| || ||  | || |  ||||||||| ||||  |   | || |||||||||||||||||||| |    
T  50669416 agactgagaaattctccaaatacccacaaaccacaatctgaagtttgatggataaaatcatccggaagagtaggcatgtctaacagtttcctttccatca 50669317  T
Q  201 aattaaaggcaacaat 216  Q
    ||| ||||||||||||    
T  50669316 aatcaaaggcaacaat 50669301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 48898999 - 48898959
Alignment:
Q  176 atctctaacagtttcctttccattaaattaaaggcaacaat 216  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  48898999 atctctaacagtttcctttccgttaaatcaaaggcaacaat 48898959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 7237417 - 7237500
Alignment:
Q  48 tgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaattctccaaatacccaca 131  Q
    |||||||||||||||||||||||  || ||||| ||||| |    ||   ||||||||||| ||||||||||||||||||||||    
T  7237417 tgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctccaaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 43596153 - 43596254
Alignment:
Q  102 atagactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccattaa 201  Q
    |||||||||||||||| ||||||||||||| | || ||| |  |||||||| || |||| |||| ||||   | |||||||| ||||| ||||| |||||    
T  43596153 atagactaagaaattccccaaatacccacatatcacaatttttaggatcatagtcaaaaccatcgggaaaaagcatctctaagagtttgctttcaattaa 43596252  T
Q  202 at 203  Q
    ||    
T  43596253 at 43596254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 7908689 - 7908657
Alignment:
Q  48 tgtattctttcatcacccatattttaagtgtat 80  Q
    |||||||||||||||||||||||| ||||||||    
T  7908689 tgtattctttcatcacccatatttcaagtgtat 7908657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 12200677 - 12200559
Alignment:
Q  100 ccatagactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccatt 199  Q
    ||||||||||||||||||||||||||||||||||||| ||||   | || ||| ||  |||||||||||||   ||||||||| || |||||||||||||    
T  12200677 ccatagactaagaaattctccaaatacccacaaaccataatacataagaccatggttgaaatcatctggaagaagtatctctaccaatttcctttccatt 12200578  T
Q  200 aaattaaaggcaacaataa 218  Q
    |||| ||||||||||||||    
T  12200577 aaatcaaaggcaacaataa 12200559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 12445105 - 12444987
Alignment:
Q  100 ccatagactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccatt 199  Q
    ||||||||||||||||||||||||||||||||||||| ||||   | || ||| ||  |||||||||||||   ||||||||| || |||||||||||||    
T  12445105 ccatagactaagaaattctccaaatacccacaaaccataatacataagaccatggttgaaatcatctggaagaagtatctctaccaatttcctttccatt 12445006  T
Q  200 aaattaaaggcaacaataa 218  Q
    |||| ||||||||||||||    
T  12445005 aaatcaaaggcaacaataa 12444987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 12195659 - 12195541
Alignment:
Q  100 ccatagactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccatt 199  Q
    ||||||||| ||||||| ||||||||||||||||||| |||     ||| ||| ||   ||||||||||||  ||||||||||||| |||||||||||||    
T  12195659 ccatagactgagaaattttccaaatacccacaaaccataatgctctggaccatggtcgtaatcatctggaagaggtatctctaacaatttcctttccatt 12195560  T
Q  200 aaattaaaggcaacaataa 218  Q
    |||| |||| |||||||||    
T  12195559 aaatcaaagacaacaataa 12195541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 12440087 - 12439969
Alignment:
Q  100 ccatagactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccatt 199  Q
    ||||||||| ||||||| ||||||||||||||||||| |||     ||| ||| ||   ||||||||||||  ||||||||||||| |||||||||||||    
T  12440087 ccatagactgagaaattttccaaatacccacaaaccataatgctctggaccatggtcgtaatcatctggaagaggtatctctaacaatttcctttccatt 12439988  T
Q  200 aaattaaaggcaacaataa 218  Q
    |||| |||| |||||||||    
T  12439987 aaatcaaagacaacaataa 12439969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 4962238 - 4962367
Alignment:
Q  93 ccatggcccatagactaagaaattctccaaatacccacaaaccaaaa--tatgg--aggatcatcgtgaaaatcatctggaacgggtatctctaacagtt 188  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| ||  ||  |  ||| |||| || ||||||||  ||||  || |||||||||| ||    
T  4962238 ccatgccccatagactgagaaattctccaaatacccacaaaccataacttacagacaggttcatagtcaaaatcattgggaagaggcatctctaacaatt 4962337  T
Q  189 tcctttccattaaattaaaggcaacaataa 218  Q
    ||||||||||||||| |||| ||| |||||    
T  4962338 tcctttccattaaatcaaagacaataataa 4962367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 15349317 - 15349100
Alignment:
Q  1 atcattaattttcagatcaagaatctatgtctgagaagaattgactctgtattctttcatcacccatattttaagtgtatgattataactgcccatggcc 100  Q
    ||||| ||| || ||| ||||||||| ||||  |||||| || ||| |||||||||||||||||||||||| ||   ||| ||||  |    || | | |    
T  15349317 atcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaagctatcattaggataatccgtagac 15349218  T
Q  101 catagactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccatta 200  Q
    || ||||||| |||||| ||||| |||||||||||| |||    || |||||  | |||||||||||||   || ||||| ||||||||||||||  |||    
T  15349217 caaagactaaaaaattcgccaaagacccacaaaccacaatcaccagcatcatgttcaaaatcatctggaggaggcatctcaaacagtttcctttcgttta 15349118  T
Q  201 aattaaaggcaacaataa 218  Q
    ||| ||| ||||||||||    
T  15349117 aatcaaatgcaacaataa 15349100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 11005640 - 11005766
Alignment:
Q  92 cccatggcccatagactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcc 191  Q
    ||||| |||||||||||||||||||||||||||| ||||||| || ||| |  ||| ||||  | |||| ||| |||||  || |||||||| |||||||    
T  11005640 cccatagcccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatatggaaaaggcatctctaaaagtttcc 11005739  T
Q  192 tttccattaaattaaaggcaacaataa 218  Q
    |||||| ||||| |||| |||||||||    
T  11005740 tttccactaaatcaaagccaacaataa 11005766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 93 - 287
Target Start/End: Original strand, 11015204 - 11015398
Alignment:
Q  93 ccatggcccatagactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcct 192  Q
    |||| ||||||||||| |||||||||||||||| ||||||| || ||| |  ||| |||| || |||| |||||||||   | ||||| || ||||||||    
T  11015204 ccatagcccatagacttagaaattctccaaatatccacaaatcacaatctataggttcatagtcaaaaccatctggaaaatgcatctccaaaagtttcct 11015303  T
Q  193 ttccattaaattaaaggcaacaataagatgcagtggtgaatcacgacgataagttaaccaatgaatggccccatttaagagtgaccctactttgg 287  Q
    ||||| ||||| |||| ||||||||| || || || | ||||| | ||| |||  ||||||||||| | |||||| |||||   |||||||||||    
T  11015304 ttccactaaatcaaagccaacaataacatccattgataaatcatggcgaaaagagaaccaatgaatagtcccattaaagagcatccctactttgg 11015398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 168
Target Start/End: Original strand, 47451564 - 47451694
Alignment:
Q  38 gaattgactctgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaattctccaaatacccacaaaccaa 137  Q
    ||||| ||| |||||||||||||||||||||||| || | ||| ||||| ||   |||   ||| ||||||||||||||||||||||||||||||||||     
T  47451564 gaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccagaacccttagactaagaaattctccaaatacccacaaaccac 47451663  T
Q  138 aatatggaggatcatcgtgaaaatcatctgg 168  Q
    |||  | ||| |||| || ||||||||||||    
T  47451664 aattggtaggttcatggtcaaaatcatctgg 47451694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 283
Target Start/End: Original strand, 11024215 - 11024406
Alignment:
Q  92 cccatggcccatagactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcc 191  Q
    ||||| ||||||||||| |||||||||||||||| ||||||| || |||    ||| ||||  | |||| |||||||||  || ||||| || |||| ||    
T  11024215 cccatagcccatagactgagaaattctccaaatatccacaaatcacaatccataggttcatgatcaaaaccatctggaaaaggcatctccaaaagttccc 11024314  T
Q  192 tttccattaaattaaaggcaacaataagatgcagtggtgaatcacgacgataagttaaccaatgaatggccccatttaagagtgaccctact 283  Q
    |||||| ||||| |||||||| ||||| || || || | |||||   ||| |||  |||||||||||   |||||| ||||||| |||||||    
T  11024315 tttccactaaatcaaaggcaataataacatccattgataaatcattgcgaaaagagaaccaatgaatattcccattaaagagtgtccctact 11024406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 179445 - 179364
Alignment:
Q  48 tgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaattctccaaataccca 129  Q
    |||||||||||||||||||||||| || ||||| ||||| |    |||| ||||||| ||| ||||||| ||||||||||||    
T  179445 tgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaataccca 179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 48884089 - 48884047
Alignment:
Q  176 atctctaacagtttcctttccattaaattaaaggcaacaataa 218  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||    
T  48884089 atctctaacagtttcttttccattaaatcaaaggcagcaataa 48884047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University