View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17533_high_15 (Length: 320)
Name: NF17533_high_15
Description: NF17533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17533_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 4005050 - 4004758
Alignment:
| Q |
17 |
ttgagaagtaagtcatatcctttaaagaaacttctttcactttgtaatgtgtatatata--cacacacatacgcatacatgtatgtgcaagtattacatg |
114 |
Q |
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| T |
4005050 |
ttgagaagtaagtcatatcctttaaagcaacttctttcactttgtaatgtgtatatatatacacacacatacgcatacatgtatgtgcaagtattacatg |
4004951 |
T |
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| Q |
115 |
tccttaaaagtaacatctaaaattttatggctctgattctctttctagttcttagcttgtgtataacatgttgcagagttgatgcaagaagcaaaactct |
214 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4004950 |
tccttgaaagtatcatctaaaattttatggctctgattctctttctagttcttagcttgtgtataacatgttgcagagttgatgcaagaagcaaaacttt |
4004851 |
T |
|
| Q |
215 |
aatagatgagcgaaatcagtttacagtatcaaagagtatcatggtattatctttgatttattgtcatttcttaatttgatttatacatgattt |
307 |
Q |
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| T |
4004850 |
aatagatgagcaaaatcagtttacactatcaaagagtatcatggtattatctttgatttactgtcctttcttaatttgatttatacatgattt |
4004758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 44011243 - 44011355
Alignment:
| Q |
102 |
caagtattacatgtccttaaaagtaacatctaaaattttatggctctgattctctttctagttcttagcttgtgtataacatgttgcagagttgatgcaa |
201 |
Q |
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|||||||||||| || | ||||||||||||||| ||||||||| | | ||||||||| ||||||| ||||| ||||||| |||||||||||| |||| |
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| T |
44011243 |
caagtattacatatctgtgaaagtaacatctaaa-ttttatggcgttaactctctttctgtttcttagtttgtgcataacatattgcagagttgacgcaa |
44011341 |
T |
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| Q |
202 |
gaagcaaaactcta |
215 |
Q |
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||||||||| |||| |
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| T |
44011342 |
gaagcaaaattcta |
44011355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 103 - 205
Target Start/End: Original strand, 20362786 - 20362888
Alignment:
| Q |
103 |
aagtattacatgtccttaaaagtaacatctaaaattttatggctctgattctctttctagttcttagcttgtgtataacatgttgcagagttgatgcaag |
202 |
Q |
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||||||||||||||||| |||||||||| ||||||| ||||| ||| |||||||||||||||||||| ||||| ||||||||||||| |||||| ||||| |
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| T |
20362786 |
aagtattacatgtccttgaaagtaacatttaaaattgtatggatctaattctctttctagttcttagtttgtgcataacatgttgcaaagttgaggcaag |
20362885 |
T |
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| Q |
203 |
aag |
205 |
Q |
| |
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||| |
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| T |
20362886 |
aag |
20362888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 103 - 205
Target Start/End: Original strand, 20430312 - 20430414
Alignment:
| Q |
103 |
aagtattacatgtccttaaaagtaacatctaaaattttatggctctgattctctttctagttcttagcttgtgtataacatgttgcagagttgatgcaag |
202 |
Q |
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||||||||||||||||| ||| |||||| ||||||| ||||| ||| ||||||||||||||| |||| ||||| ||||||||||||| |||||| ||||| |
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| T |
20430312 |
aagtattacatgtccttgaaaataacatttaaaattgtatggatctaattctctttctagtttttagtttgtgcataacatgttgcaaagttgaggcaag |
20430411 |
T |
|
| Q |
203 |
aag |
205 |
Q |
| |
|
||| |
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| T |
20430412 |
aag |
20430414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 20295563 - 20295443
Alignment:
| Q |
103 |
aagtattacatgtccttaaaagtaacatctaaaattttatggctctgattctctttctagttcttagcttgtgtataacatgttgcagagttgatgcaag |
202 |
Q |
| |
|
||||||||||||||||| | |||||||| |||||||| |||| | | ||||||||||| ||||| || ||||| ||||||||||||| |||||| ||||| |
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| T |
20295563 |
aagtattacatgtccttgagagtaacatttaaaatttcatggatttaattctctttctcgttctcagtttgtgcataacatgttgcaaagttgaggcaag |
20295464 |
T |
|
| Q |
203 |
aagcaaaactctaatagatga |
223 |
Q |
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|||||||| | || ||||||| |
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| T |
20295463 |
aagcaaaattttactagatga |
20295443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 20269900 - 20269780
Alignment:
| Q |
103 |
aagtattacatgtccttaaaagtaacatctaaaattttatggctctgattctctttctagttcttagcttgtgtataacatgttgcagagttgatgcaag |
202 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| |||| | | ||| ||||||| ||||| || ||||| ||||||||||||| |||||| || || |
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| T |
20269900 |
aagtattacatgtccttgaaagtaacatttaaaatttcatggatttaattttctttctcgttctcagtttgtgcataacatgttgcaaagttgaggcgag |
20269801 |
T |
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| Q |
203 |
aagcaaaactctaatagatga |
223 |
Q |
| |
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|||||||| | || ||||||| |
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| T |
20269800 |
aagcaaaattttactagatga |
20269780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 20349125 - 20349245
Alignment:
| Q |
103 |
aagtattacatgtccttaaaagtaacatctaaaattttatggctctgattctctttctagttcttagcttgtgtataacatgttgcagagttgatgcaag |
202 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| |||| | | ||| |||| || ||||| || ||||| ||||||||||||| |||||| ||||| |
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| T |
20349125 |
aagtattacatgtccttgaaagtaacatttaaaatttcatggatttaattatcttactcgttctcagtttgtgcataacatgttgcaaagttgaggcaag |
20349224 |
T |
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| Q |
203 |
aagcaaaactctaatagatga |
223 |
Q |
| |
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|||||||| | || ||||||| |
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| T |
20349225 |
aagcaaaattttactagatga |
20349245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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