View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17533_high_18 (Length: 245)

Name: NF17533_high_18
Description: NF17533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17533_high_18
NF17533_high_18
[»] chr7 (5 HSPs)
chr7 (38-230)||(28287646-28287834)
chr7 (92-148)||(43542440-43542496)
chr7 (92-148)||(33117877-33117933)
chr7 (92-148)||(27986229-27986284)
chr7 (101-153)||(32595209-32595261)
[»] chr2 (3 HSPs)
chr2 (99-154)||(18497212-18497267)
chr2 (92-145)||(28694387-28694440)
chr2 (99-148)||(38766288-38766337)
[»] chr8 (6 HSPs)
chr8 (98-148)||(373750-373800)
chr8 (92-145)||(5374616-5374669)
chr8 (92-152)||(37288371-37288431)
chr8 (92-145)||(40439758-40439811)
chr8 (93-145)||(23052267-23052319)
chr8 (99-153)||(34944143-34944197)
[»] chr1 (5 HSPs)
chr1 (92-145)||(12967283-12967336)
chr1 (100-153)||(33816370-33816423)
chr1 (100-153)||(33875840-33875893)
chr1 (98-153)||(2603108-2603163)
chr1 (101-153)||(21938051-21938103)
[»] chr3 (7 HSPs)
chr3 (93-153)||(118775-118835)
chr3 (95-145)||(52551092-52551142)
chr3 (99-148)||(1214775-1214825)
chr3 (92-153)||(11225837-11225898)
chr3 (92-153)||(11236093-11236154)
chr3 (98-139)||(25630149-25630190)
chr3 (92-144)||(46879408-46879460)
[»] chr4 (4 HSPs)
chr4 (98-153)||(31063634-31063689)
chr4 (93-145)||(27918229-27918281)
chr4 (92-147)||(19529675-19529730)
chr4 (93-145)||(42170691-42170743)
[»] chr5 (1 HSPs)
chr5 (92-145)||(15711034-15711087)
[»] chr6 (1 HSPs)
chr6 (92-137)||(32109584-32109629)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 38 - 230
Target Start/End: Original strand, 28287646 - 28287834
Alignment:
Q  38 ttaatgattatttttccatcatgcaatttactagttattactttannnnnnnnncaattattttaatttatgttttccatgccattaataaaagatattt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||||||||||||||||||    
T  28287646 ttaatgattatttttccatcatgcaatttactagttattactttattttttt--caattattttaatttatattttccatgccattaataaaagatattt 28287743  T
Q  138 ttgtaaaataagtcattaaaacatataattttggatggaaggagtgtcacatagagtaaatctattacctataaggtccactttaatatatat 230  Q
    ||||||||||| ||||||||||   ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||    
T  28287744 ttgtaaaataactcattaaaac--gtaattttggatggaaggagtgtcacgtacagtaaatctattacctataaggtccactttactatatat 28287834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 43542440 - 43542496
Alignment:
Q  92 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaataa 148  Q
    ||||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  43542440 caattcttttaatttacgttttccatgctattaataaatgatatttttgtaaaataa 43542496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 33117933 - 33117877
Alignment:
Q  92 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaataa 148  Q
    ||||| ||||| || |||||||||||  |||||||||||||||||||||||||||||    
T  33117933 caattcttttagttcatgttttccatttcattaataaaagatatttttgtaaaataa 33117877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 27986229 - 27986284
Alignment:
Q  92 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaataa 148  Q
    ||||| |||||||||||||||| ||| ||||||||||||||| ||||| ||||||||    
T  27986229 caattcttttaatttatgtttttcattccattaataaaagat-tttttttaaaataa 27986284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 32595261 - 32595209
Alignment:
Q  101 taatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 153  Q
    |||||||||||||  || ||||||||||| ||||||||| |||||||| ||||    
T  32595261 taatttatgttttttataccattaataaaggatatttttataaaataactcat 32595209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 18497212 - 18497267
Alignment:
Q  99 tttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcatt 154  Q
    ||||||||||||||||||  |||||||||||| ||||||||||||||||| |||||    
T  18497212 tttaatttatgttttccaaaccattaataaaatatatttttgtaaaataactcatt 18497267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 28694440 - 28694387
Alignment:
Q  92 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 145  Q
    |||||||||||||||||||||| ||| |||||||||||  ||||||||||||||    
T  28694440 caattattttaatttatgtttttcataccattaataaagaatatttttgtaaaa 28694387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 38766288 - 38766337
Alignment:
Q  99 tttaatttatgttttccatgccattaataaaagatatttttgtaaaataa 148  Q
    |||||||||| ||| ||||||||||||| || |||| |||||||||||||    
T  38766288 tttaatttatttttcccatgccattaatgaaggatagttttgtaaaataa 38766337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 373800 - 373750
Alignment:
Q  98 ttttaatttatgttttccatgccattaataaaagatatttttgtaaaataa 148  Q
    ||||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  373800 ttttaatttatattttccatacaattaataaaagatatttttgtaaaataa 373750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 5374616 - 5374669
Alignment:
Q  92 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 145  Q
    ||||||||||| ||||||||||||||  |||||||||| |||||||||||||||    
T  5374616 caattattttattttatgttttccatatcattaataaatgatatttttgtaaaa 5374669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 37288431 - 37288371
Alignment:
Q  92 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtca 152  Q
    ||||||||||||||||| |||| ||| | |||||||||| |||||||||||||| ||||||    
T  37288431 caattattttaatttatatttttcatacaattaataaaaaatatttttgtaaaacaagtca 37288371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 40439811 - 40439758
Alignment:
Q  92 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 145  Q
    ||||| |||||||||||||||||||| |||||| | || |||||||||||||||    
T  40439811 caattcttttaatttatgttttccataccattagtgaaggatatttttgtaaaa 40439758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 23052267 - 23052319
Alignment:
Q  93 aattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 145  Q
    ||||||||||||| ||||||||||| |||||||| || ||||| |||||||||    
T  23052267 aattattttaattaatgttttccataccattaatgaaggatatctttgtaaaa 23052319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 34944143 - 34944197
Alignment:
Q  99 tttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 153  Q
    |||||||||||||||||||  ||||||| || |||||||| ||||||||| ||||    
T  34944143 tttaatttatgttttccatatcattaatgaaggatattttagtaaaataactcat 34944197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 12967283 - 12967336
Alignment:
Q  92 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 145  Q
    ||||| |||| ||||||||||||||| ||||||||||| |||||||||||||||    
T  12967283 caattctttttatttatgttttccataccattaataaaggatatttttgtaaaa 12967336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 33816370 - 33816423
Alignment:
Q  100 ttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 153  Q
    ||||||||||||||||||||||||||| || |||||||| ||| ||||| ||||    
T  33816370 ttaatttatgttttccatgccattaatgaatgatattttcgtataataactcat 33816423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 33875840 - 33875893
Alignment:
Q  100 ttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 153  Q
    ||||||||||||||||||||||||||| || |||||||| ||| ||||| ||||    
T  33875840 ttaatttatgttttccatgccattaatgaatgatattttcgtataataactcat 33875893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 2603108 - 2603163
Alignment:
Q  98 ttttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 153  Q
    ||||||||||||||||||||  | ||||| || |||||||||||||||||| ||||    
T  2603108 ttttaatttatgttttccatatcgttaatgaatgatatttttgtaaaataactcat 2603163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 21938051 - 21938103
Alignment:
Q  101 taatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 153  Q
    ||||||||||||  ||| ||| |||| ||||||||||||||||||||| ||||    
T  21938051 taatttatgtttatcataccactaatgaaagatatttttgtaaaataattcat 21938103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 118775 - 118835
Alignment:
Q  93 aattattttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 153  Q
    |||| ||||||||||||||| |||| |||||||| || |||||||||||||||||| ||||    
T  118775 aattcttttaatttatgtttaccataccattaattaatgatatttttgtaaaataactcat 118835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 52551142 - 52551092
Alignment:
Q  95 ttattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 145  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||| ||||    
T  52551142 ttattttaatttatgtttttcataccattaataaatgatatttttgcaaaa 52551092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 1214825 - 1214775
Alignment:
Q  99 tttaatttatgttttccatgccattaataaaagata-tttttgtaaaataa 148  Q
    ||||||||||||||||||| ||| ||||||| |||| ||||||||||||||    
T  1214825 tttaatttatgttttccataccaataataaaggatattttttgtaaaataa 1214775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 11225837 - 11225898
Alignment:
Q  92 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 153  Q
    ||||| ||||||| ||| ||||||||   |||||| ||||||||||||||||||||| ||||    
T  11225837 caattcttttaatgtattttttccatatgattaatgaaagatatttttgtaaaataattcat 11225898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 11236093 - 11236154
Alignment:
Q  92 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 153  Q
    ||||| ||||||||||| ||||||||   ||||||||||||| |||| ||||||||| ||||    
T  11236093 caattcttttaatttatattttccatataattaataaaagatgttttagtaaaataactcat 11236154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 25630149 - 25630190
Alignment:
Q  98 ttttaatttatgttttccatgccattaataaaagatattttt 139  Q
    ||||||||||||||||| || ||||||||||| |||||||||    
T  25630149 ttttaatttatgttttcgataccattaataaaggatattttt 25630190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 46879460 - 46879408
Alignment:
Q  92 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaa 144  Q
    ||||| ||||||||||||||||||||   ||||||||| ||||||||| ||||    
T  46879460 caattcttttaatttatgttttccatattattaataaatgatatttttataaa 46879408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 31063634 - 31063689
Alignment:
Q  98 ttttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 153  Q
    |||||||||||||||||||| |||||| | || |||||||||||||||||| ||||    
T  31063634 ttttaatttatgttttccataccattagtgaaggatatttttgtaaaataactcat 31063689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 27918281 - 27918229
Alignment:
Q  93 aattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 145  Q
    |||| |||||||||||||||||||| | ||||||||| ||||||| |||||||    
T  27918281 aattcttttaatttatgttttccatactattaataaatgatatttatgtaaaa 27918229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 19529730 - 19529675
Alignment:
Q  92 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaata 147  Q
    ||||| |||| ||||| ||||||||| |||||||||||  ||||||||||||||||    
T  19529730 caattctttttatttaggttttccataccattaataaagaatatttttgtaaaata 19529675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 42170691 - 42170743
Alignment:
Q  93 aattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 145  Q
    |||| |||||||||||||||||||  |||||||  || |||||||||||||||    
T  42170691 aattcttttaatttatgttttccacaccattaacgaatgatatttttgtaaaa 42170743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 15711087 - 15711034
Alignment:
Q  92 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 145  Q
    ||||| |||||||||||||||||||| |||||||| || ||||||||| |||||    
T  15711087 caattcttttaatttatgttttccataccattaatgaatgatatttttataaaa 15711034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 32109629 - 32109584
Alignment:
Q  92 caattattttaatttatgttttccatgccattaataaaagatattt 137  Q
    ||||| |||||||||||||||||||| |||||||| || |||||||    
T  32109629 caattcttttaatttatgttttccataccattaatgaatgatattt 32109584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University