View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17533_high_3 (Length: 419)
Name: NF17533_high_3
Description: NF17533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17533_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 132 - 404
Target Start/End: Original strand, 9402260 - 9402532
Alignment:
| Q |
132 |
gtaaataccctttattcgaattatagaatctcaaccatgttttgtgttctctaatccgaacgttgttaaaattgaagtcaagaccatagaactatattga |
231 |
Q |
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| T |
9402260 |
gtaaataccctttattcgaattatagaatttcaaccatgttttgtgttctctaatccgaacgttgttacaattgaagtcaagactatagaactatattga |
9402359 |
T |
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| Q |
232 |
tgtttgtccgatgcttgtaaatatacgattcaaattataccatgcacgctaacacacctacgaagatatacaacccctcccttagccttttacataattg |
331 |
Q |
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| T |
9402360 |
tgtttgtctggtgcttgtaaatatacggttcaaattataccatgcaccctaacacacctacggcgatatgcaacccctccctaagccttttacataattg |
9402459 |
T |
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| Q |
332 |
cattcaaactaatacaagtcggacttccctcctccacttgaccactgtccattatagtatggcttggtctctg |
404 |
Q |
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| T |
9402460 |
cattcagactaatacaagtcggacttccctcctccatttgaccactgtccattatagcatggcttggtctctg |
9402532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 9402147 - 9402196
Alignment:
| Q |
18 |
cacccagcaacattgttgtttggaaactagtgattccaatccctttactg |
67 |
Q |
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| T |
9402147 |
cacccagcaacattgttgtttggaaactagtgattccaatccctttactg |
9402196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 40975963 - 40975892
Alignment:
| Q |
294 |
aagatatacaacccctcccttagccttttacataattgcattcaaactaatacaagtcggacttccctcctc |
365 |
Q |
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| T |
40975963 |
aagataaacaatccctccctaagcctcatgtataattgcatgcaaacaaatccaagtcggacttccctcctc |
40975892 |
T |
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