View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17533_high_6 (Length: 407)
Name: NF17533_high_6
Description: NF17533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17533_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 35733788 - 35734178
Alignment:
| Q |
1 |
cttcttgacaaatagttccccttaagaaatgaaggattccacaataagataaaacatggacttcgactcttaataaaccaagagcagcttgttcgaaaaa |
100 |
Q |
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| T |
35733788 |
cttcttgaccaatagttccccttaagaaatgaaggattccacaataagataaaacatggacttcgactcttaataaaccaagagcagcttgttcgaaaaa |
35733887 |
T |
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| Q |
101 |
taggagatcagcccataaactgaaacaa-cnnnnnnnttaagttaacatcaataaaacatattgtttttaatggattaaggtcccatttgtgtgtgttta |
199 |
Q |
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| T |
35733888 |
taggagatcagcccataaactgaaaaaaacaaaaaaattaagttaacatcaataaaacatattgtttttaatggattaaggtcccatttgtgtgtgttta |
35733987 |
T |
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| Q |
200 |
tttgaagaaaaagggaaactctaaagcccctactcaaaagccaaaacaatgtctgaagaaagctctaaaa-gaaagtgcatcataaagtcattgtttaca |
298 |
Q |
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| T |
35733988 |
tttgaagaaaaagggaaactctaaagcccctactcaaaagccaaaacaatgtctgaagaaagctctaaaatgaaagtgcatcataaagtcattgtttaca |
35734087 |
T |
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| Q |
299 |
aaaaagaattgacatataattgatgaataatgagatcatagcaactcacaagtatggtctaattgtggcagagatatagccaccccacacc |
389 |
Q |
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| T |
35734088 |
aaaaagaattgacatataattgatgaataatgagatcatagcaactcacaagtatggtctaattgtggcagagatatagccaccccacacc |
35734178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 35760732 - 35760632
Alignment:
| Q |
147 |
atcaataaaacatattgtttttaatggattaaggtcccatttgtgtg--tgtttatttgaagaaaaagggaaactctaaagcccctactcaaaagccaaa |
244 |
Q |
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| T |
35760732 |
atcaataaaacatatcctatttaatggactaaggttccatttgtgcgagtgtttatttgatgaaaaagggaaattcaaaagttcctactcagaagctaaa |
35760633 |
T |
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| Q |
245 |
a |
245 |
Q |
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| T |
35760632 |
a |
35760632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 35854623 - 35854655
Alignment:
| Q |
164 |
tttttaatggattaaggtcccatttgtgtgtgt |
196 |
Q |
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| T |
35854623 |
tttttaatggattaaggtctcatttgtgtgtgt |
35854655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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