View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17533_low_1 (Length: 464)
Name: NF17533_low_1
Description: NF17533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17533_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 30767675 - 30767897
Alignment:
| Q |
12 |
acctgtgatgatgaacctctgaagaagaatccataggaatctcattccatgttctaacagaatgcgaaaaatttgactgaagggtctcgtttggagagta |
111 |
Q |
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| T |
30767675 |
acctgtgatgatgaacctctgaagaagaatccataggaatctcattccatgttctaacagaatgcgaaaaatttgactgaagggtctcgtttggagagta |
30767774 |
T |
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| Q |
112 |
ttctgaaccggaaccttggcctagaaatgactgtgagtttaccatgaatccaactttctttatataatcattggttgtttcattgttccaattctcaatt |
211 |
Q |
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| T |
30767775 |
ttctgaaccggaaccttggcctagaaatgactgtgagtttaccatgaatccaactttctttatataatcattggttgtttcattgttccaattctcaatt |
30767874 |
T |
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| Q |
212 |
ctatgatattggttctcaaaaaa |
234 |
Q |
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||||||||||||||||||||||| |
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| T |
30767875 |
ctatgatattggttctcaaaaaa |
30767897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 279 - 448
Target Start/End: Original strand, 30767942 - 30768111
Alignment:
| Q |
279 |
cacatacttgttgcgattgccatggaatgaaaccattgtgatcttggaaggaatgaagagagaggccaaggttttcagaagggtagttttgaaaattgat |
378 |
Q |
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| T |
30767942 |
cacatacttgttgtgattgccatggaatgaaaccattgtgatcttggaaggaatgaagagagaggccaaggttttcagaagggtagttttgaaaattgat |
30768041 |
T |
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| Q |
379 |
ggatgaagaagtagaagatgtagttggnnnnnnnggtataggatcagtttcaacattatgtggtgaaatg |
448 |
Q |
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| T |
30768042 |
ggatgaagaagtagaagatgtagttggaaaaaaaggtataggatcagtttcaacattatgtggtgaaatg |
30768111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 122 - 232
Target Start/End: Original strand, 5053472 - 5053580
Alignment:
| Q |
122 |
gaaccttggcctagaaatgactgtgagtttaccatgaatccaactttctttatataatcattggttgtttcattgttccaattctcaattctatgatatt |
221 |
Q |
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|||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||| ||||||| | ||||| |
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| T |
5053472 |
gaaccttgacctagaaatgaccg--agtttaccatgaatccaactttctttatataatcagtggttgtttcactgctccatttcacaattctcttatatt |
5053569 |
T |
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| Q |
222 |
ggttctcaaaa |
232 |
Q |
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|| |||||||| |
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| T |
5053570 |
ggctctcaaaa |
5053580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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