View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17533_low_10 (Length: 364)
Name: NF17533_low_10
Description: NF17533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17533_low_10 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 48912011 - 48911688
Alignment:
| Q |
20 |
tcaccgtcaagttcagcaaaattgttaacaatgattccgttgcttttgaaaaccgtctccaaaagcgcttccaataagtcactcatctgcttcggcggag |
119 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||| | ||||||||||||||| | ||||| ||||||||| || | |
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| T |
48912011 |
tcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttgaaaactgtctcaagaagcgcttccaataatttactcagctgcttcggtggtg |
48911912 |
T |
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| Q |
120 |
ctgcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaa |
219 |
Q |
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| T |
48911911 |
ctgcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaa |
48911812 |
T |
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| Q |
220 |
cagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagcgacgatgcaatctggtggg |
319 |
Q |
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| T |
48911811 |
cagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagccacgatgcaatctggtggg |
48911712 |
T |
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| Q |
320 |
tgctgctccacgaagtgttggatg |
343 |
Q |
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| T |
48911711 |
tgctgctccacgaagtgttggatg |
48911688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 333
Target Start/End: Original strand, 48951927 - 48952063
Alignment:
| Q |
197 |
gattccatggcacaaatagcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaat |
296 |
Q |
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| T |
48951927 |
gattccatggcacatatggtaaagagtgagaaaccgttgaacacgaatctcggaatgtgcagcttctttgctagctcatcagcccacgggaataaaaaat |
48952026 |
T |
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| Q |
297 |
cagcgacgatgcaatctggtgggtgctgctccacgaa |
333 |
Q |
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| T |
48952027 |
ccgccacgatgcaatcaggtgggtgctgctccacgaa |
48952063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 6177 - 5854
Alignment:
| Q |
20 |
tcaccgtcaagttcagcaaaattgttaacaatgattccgttgcttttgaaaaccgtctccaaaagcgcttccaataagtcactcatctgcttcggcggag |
119 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6177 |
tcaccgtcaagttcagaaaaattgttaacaatgattccgttgcttttgaaaaccgtctccaaaagcgcttccaataagtcactcatctgcttcggcggag |
6078 |
T |
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| Q |
120 |
ctgcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaa |
219 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
6077 |
ctgcattcatggcaatagaatgaggaagaccaggaattacaaatgaagcagattcataaagagagtgtgctttaacagattctatggcacaaattgcaaa |
5978 |
T |
|
| Q |
220 |
cagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagcgacgatgcaatctggtggg |
319 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||| |||||| || || |||||||| |||||| |
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| T |
5977 |
cagagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccggtggg |
5878 |
T |
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| Q |
320 |
tgctgctccacgaagtgttggatg |
343 |
Q |
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| T |
5877 |
tgctgctccacgaagtgttggatg |
5854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 22 - 343
Target Start/End: Complemental strand, 10159 - 9838
Alignment:
| Q |
22 |
accgtcaagttcagcaaaattgttaacaatgattccgttgcttttgaaaaccgtctccaaaagcgcttccaataagtcactcatctgcttcggcggagct |
121 |
Q |
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|||||||||||| ||||||| || |||| ||| || | |||||||||||| |||||||| || || |||| | |||||||||||||| ||||| | | |
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| T |
10159 |
accgtcaagttctacaaaattattgacaaggatcccttgacttttgaaaaccatctccaaacgctctcccaagatttcactcatctgcttaggcggtgtt |
10060 |
T |
|
| Q |
122 |
gcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaaca |
221 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10059 |
gcattcatgacaatagaatgaggaagaccaggaattacaaaagaagcatatccataaagtgagtgtgctttaacagattccatggcacaaatagcaaaca |
9960 |
T |
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| Q |
222 |
gagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagcgacgatgcaatctggtgggtg |
321 |
Q |
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|||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||| ||| ||||| | ||||||||||| |||||||| |
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| T |
9959 |
gagagaaaccgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaaaaaatctgtcacgatgcaatccggtgggtg |
9860 |
T |
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| Q |
322 |
ctgctccacgaagtgttggatg |
343 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
9859 |
ctgctccacgaagtgttggatg |
9838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 333
Target Start/End: Complemental strand, 948 - 812
Alignment:
| Q |
197 |
gattccatggcacaaatagcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaat |
296 |
Q |
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|||||||||||||| || | ||| || |||||||||||||| |||| ||| ||||| || ||||||||||| || |||| |||||||| | | |||| |
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| T |
948 |
gattccatggcacatatggtaaatagtgagaaaccgttgaaggcaaatctcggaatgtgaagcttgtttgccagctcatccacccaagggaataaaaaat |
849 |
T |
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| Q |
297 |
cagcgacgatgcaatctggtgggtgctgctccacgaa |
333 |
Q |
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| T |
848 |
ccgctacgatgcaatcaggtggttcctgttccacgaa |
812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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